Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007595.1 Kokia drynarioides strain JFW-HI SEQ_122226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3041
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35


Found at i:2777 original size:94 final size:95

Alignment explanation


    Indices: 2612--2804  Score: 289
    Period size: 94  Copynumber: 2.0  Consensus size: 95

       2602 TTGTCAATAA

                                 * * *          *     *                   *  
       2612 GTTTGTTAATGGTTTACTAGACATTGATTGTTGTTTTTTTGGTTATTTCATTGTGTTTGTAACTG
          1 GTTTGTTAATGGTTTACTAGAAACTAATTGTTGTTTATTTGGCTATTTCATTGTGTTTGTAAATG

             *                            
       2677 ACTGTTAGGTTATTATTTGATGTCTTCAAT
         66 AATGTTAGGTTATTATTTGATGTCTTCAAT

                   *                                                         
       2707 GTTTGTTGATGGTTTACTAGAAACTAATTGTTG-TTATTTGGCTATTTCATTGTGTTTGTAAATG
          1 GTTTGTTAATGGTTTACTAGAAACTAATTGTTGTTTATTTGGCTATTTCATTGTGTTTGTAAATG

                       *                * 
       2771 AATGTTAGGTTCTTATTTGATGTCTTCATT
         66 AATGTTAGGTTATTATTTGATGTCTTCAAT

                
       2801 GTTT
          1 GTTT

       2805 TCTCAACCAA


Statistics
Matches: 88,  Mismatches: 10, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
  94   59  0.67
  95   29  0.33

ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53


Consensus pattern (95 bp):   
GTTTGTTAATGGTTTACTAGAAACTAATTGTTGTTTATTTGGCTATTTCATTGTGTTTGTAAATG
AATGTTAGGTTATTATTTGATGTCTTCAAT
Done.