Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007596.1 Kokia drynarioides strain JFW-HI SEQ_122227, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5918
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36


Found at i:4592 original size:22 final size:20

Alignment explanation


    Indices: 4547--4594  Score: 53
    Period size: 22  Copynumber: 2.3  Consensus size: 20

       4537 AATTATATTT

                               *
       4547 ATTTTTTAAAATTATTAATG
          1 ATTTTTTAAAATTATTAATA

                                   
       4567 ATTTTTTAAGAAATTCATTAA-A
          1 ATTTTTT-A-AAATT-ATTAATA

                  
       4589 ATTTTT
          1 ATTTTT

       4595 AAACAAAATT


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  20    7  0.29
  21    1  0.04
  22   11  0.46
  23    5  0.21

ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54


Consensus pattern (20 bp):   
ATTTTTTAAAATTATTAATA

Found at i:4842 original size:17 final size:17

Alignment explanation


    Indices: 4821--4861  Score: 57
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       4811 AAAAAATATT

                       *      
       4821 TATATTTATATTATTTTA
          1 TATATTTA-ATGATTTTA

                             
       4839 -ATATTTAATGATTTTA
          1 TATATTTAATGATTTTA

                   
       4855 TATATTT
          1 TATATTT

       4862 TTTATTTATT


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  16    8  0.38
  17   13  0.62

ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63


Consensus pattern (17 bp):   
TATATTTAATGATTTTA
Done.