Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000761.1 Kokia drynarioides strain JFW-HI SEQ_111809, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1936
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32


Found at i:1362 original size:18 final size:19

Alignment explanation


    Indices: 1335--1374  Score: 55
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       1325 ATGTTACCTC

                               
       1335 AAAAACT-AAATAAAATAA
          1 AAAAACTAAAATAAAATAA

                 *         *   
       1353 AAAAATTAAAATAAATTAA
          1 AAAAACTAAAATAAAATAA

               
       1372 AAA
          1 AAA

       1375 TCAAATAAAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  18    6  0.32
  19   13  0.68

ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20


Consensus pattern (19 bp):   
AAAAACTAAAATAAAATAA

Found at i:1373 original size:16 final size:15

Alignment explanation


    Indices: 1342--1386  Score: 56
    Period size: 16  Copynumber: 3.0  Consensus size: 15

       1332 CTCAAAAACT

                           
       1342 AAATAAAATAAA-AA
          1 AAATAAAATAAATAA

              *             
       1356 AATTAAAATAAATTAA
          1 AAATAAAATAAA-TAA

                *          
       1372 AAATCAAATAAATAA
          1 AAATAAAATAAATAA

       1387 GCATATGTTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  14   11  0.42
  15    3  0.12
  16   12  0.46

ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22


Consensus pattern (15 bp):   
AAATAAAATAAATAA
Done.