Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007618.1 Kokia drynarioides strain JFW-HI SEQ_122249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3931
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:3496 original size:94 final size:94

Alignment explanation


    Indices: 3338--3524  Score: 349
    Period size: 94  Copynumber: 2.0  Consensus size: 94

       3328 ACGAAAATTT

                  *                                                          
       3338 TTTGGTGTGAGATGACGTGGCAAATTATTGTCTTAGGAAATTTTCCAATAATTGGAAGTTCTTTT
          1 TTTGGTATGAGATGACGTGGCAAATTATTGTCTTAGGAAATTTTCCAATAATTGGAAGTTCTTTT

                                         
       3403 TCATTGCTTTTTTTTAATGATAAAAATGA
         66 TCATTGCTTTTTTTTAATGATAAAAATGA

                                                                             
       3432 TTTGGTATGAGATGACGTGGCAAATTATTGTCTTAGGAAATTTTCCAATAATT-GAAGTTACTTT
          1 TTTGGTATGAGATGACGTGGCAAATTATTGTCTTAGGAAATTTTCCAATAATTGGAAGTT-CTTT

                                         
       3496 TTCATTGCTTTTTTTTAATGATAAAAATG
         65 TTCATTGCTTTTTTTTAATGATAAAAATG

       3525 GAAAAAAAAT


Statistics
Matches: 91,  Mismatches: 1, Indels: 2
        0.97            0.01        0.02

Matches are distributed among these distances:
  93    6  0.07
  94   85  0.93

ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44


Consensus pattern (94 bp):   
TTTGGTATGAGATGACGTGGCAAATTATTGTCTTAGGAAATTTTCCAATAATTGGAAGTTCTTTT
TCATTGCTTTTTTTTAATGATAAAAATGA
Done.