Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007622.1 Kokia drynarioides strain JFW-HI SEQ_122253, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13664
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:12931 original size:38 final size:38

Alignment explanation


    Indices: 12860--12935  Score: 100
    Period size: 38  Copynumber: 2.0  Consensus size: 38

      12850 GAAGGCGGTA

                *                    **           
      12860 ACTAGGGCAAATGGAGAAGGAAAAAGGGAAGTAAAGAG
          1 ACTAAGGCAAATGGAGAAGGAAAAAAAGAAGTAAAGAG

                             *                     
      12898 ACTAAGGCAAATGGAGACGGAAAGAAAAG-AGTAAAGAG
          1 ACTAAGGCAAATGGAGAAGGAAA-AAAAGAAGTAAAGAG

      12936 TGAAAAACAA


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  38   30  0.91
  39    3  0.09

ACGTcount: A:0.51, C:0.07, G:0.34, T:0.08


Consensus pattern (38 bp):   
ACTAAGGCAAATGGAGAAGGAAAAAAAGAAGTAAAGAG
Done.