Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000763.1 Kokia drynarioides strain JFW-HI SEQ_111813, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6325
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:5422 original size:20 final size:20

Alignment explanation


    Indices: 5392--5435  Score: 56
    Period size: 19  Copynumber: 2.2  Consensus size: 20

       5382 TAGTAACAAC

                                  
       5392 TAAATATTAAATAATA-AAAAA
          1 TAAATATTAAA-AA-ACAAAAA

                                
       5413 TAAA-ATTAAAAAACAAAAA
          1 TAAATATTAAAAAACAAAAA

                
       5432 TAAA
          1 TAAA

       5436 CATCAAATGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  18    1  0.05
  19   11  0.50
  20    6  0.27
  21    4  0.18

ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23


Consensus pattern (20 bp):   
TAAATATTAAAAAACAAAAA
Done.