Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007636.1 Kokia drynarioides strain JFW-HI SEQ_122267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1779
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32


Found at i:268 original size:147 final size:147

Alignment explanation


    Indices: 1--270  Score: 441
    Period size: 147  Copynumber: 1.8  Consensus size: 147

                                * *                        **       *        
          1 GGTTTTTGGGGAACATAATCGTGTGATGGTCTGTGTGGTCCACGAGTGGCCCTAGGCACAATTTT
          1 GGTTTTTGGGGAACATAATCATATGATGGTCTGTGTGGTCCACGAGTCACCCTAGGAACAATTTT

             **     *                                    *                   
         66 CGTTGATTTGATTGTAAAAGAACACATGCATGTTACCAGAATCTCGAGCGATGTCCCTTAATGTG
         66 CCCTGATTCGATTGTAAAAGAACACATGCATGTTACCAGAATCTCAAGCGATGTCCCTTAATGTG

                             
        131 AAAATCGAAAAACCTTA
        131 AAAATCGAAAAACCTTA

                                          *                             *    
        148 GGTTTTTGGGGAACATAATCATATGATGGTTTGTGTGGTCCACGAGTCACCCTAGGAACATTTTT
          1 GGTTTTTGGGGAACATAATCATATGATGGTCTGTGTGGTCCACGAGTCACCCTAGGAACAATTTT

                                                                      
        213 CCCTGATTCGATTGTAAAAGAACACATGCATGTTACCAGAATCTCAAGCGATGTCCCT
         66 CCCTGATTCGATTGTAAAAGAACACATGCATGTTACCAGAATCTCAAGCGATGTCCCT

        271 CATGTTCAAA


Statistics
Matches: 112,  Mismatches: 11, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
 147  112  1.00

ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30


Consensus pattern (147 bp):   
GGTTTTTGGGGAACATAATCATATGATGGTCTGTGTGGTCCACGAGTCACCCTAGGAACAATTTT
CCCTGATTCGATTGTAAAAGAACACATGCATGTTACCAGAATCTCAAGCGATGTCCCTTAATGTG
AAAATCGAAAAACCTTA
Done.