Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007639.1 Kokia drynarioides strain JFW-HI SEQ_122270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10543
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34

Warning! 29 characters in sequence are not A, C, G, or T


Found at i:3371 original size:12 final size:12

Alignment explanation


    Indices: 3354--3383  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       3344 GCAAACTAGT

                        
       3354 CATTTCAGTTAA
          1 CATTTCAGTTAA

                        
       3366 CATTTCAGTTAA
          1 CATTTCAGTTAA

            *     
       3378 AATTTC
          1 CATTTC

       3384 CACTCATTAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43


Consensus pattern (12 bp):   
CATTTCAGTTAA

Found at i:6670 original size:17 final size:17

Alignment explanation


    Indices: 6644--6678  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       6634 ATTTATGCTA

                             
       6644 TCATTTCATCTT-CTCT
          1 TCATTTCATCTTCCTCT

                              
       6660 TCATCTTCATCTTCCTCT
          1 TCAT-TTCATCTTCCTCT

             
       6678 T
          1 T

       6679 TTTCTTGTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    4  0.24
  17    8  0.47
  18    5  0.29

ACGTcount: A:0.11, C:0.34, G:0.00, T:0.54


Consensus pattern (17 bp):   
TCATTTCATCTTCCTCT
Done.