Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007641.1 Kokia drynarioides strain JFW-HI SEQ_122272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5437
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36


Found at i:4592 original size:24 final size:24

Alignment explanation


    Indices: 4560--4609  Score: 59
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       4550 TATCATATGC

                                      
       4560 TTAACCATGTATCA-AAAATCAT-AA
          1 TTAACCATG-A-CATAAAATCATCAA

                *                   
       4584 TTAATCATGACATAAAATCATCAA
          1 TTAACCATGACATAAAATCATCAA

              
       4608 TT
          1 TT

       4610 TAGCATATAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 4
        0.82            0.04        0.14

Matches are distributed among these distances:
  22    2  0.09
  23    9  0.39
  24   12  0.52

ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32


Consensus pattern (24 bp):   
TTAACCATGACATAAAATCATCAA
Done.