Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007642.1 Kokia drynarioides strain JFW-HI SEQ_122273, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8914
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:1088 original size:27 final size:27

Alignment explanation


    Indices: 1050--1102  Score: 79
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1040 TTTCTTGAAA

                           *     *     
       1050 GTACCTGTGTCCAATGTATATGTAGAT
          1 GTACCTGTGTCCAATATATATATAGAT

                *                     
       1077 GTACTTGTGTCCAATATATATATAGA
          1 GTACCTGTGTCCAATATATATATAGA

       1103 CATTGCTATG


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38


Consensus pattern (27 bp):   
GTACCTGTGTCCAATATATATATAGAT
Done.