Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01007643.1 Kokia drynarioides strain JFW-HI SEQ_122274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7215
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Found at i:780 original size:216 final size:216
Alignment explanation
Indices: 4--2031 Score: 2030
Period size: 216 Copynumber: 9.4 Consensus size: 216
1 GTA
* * *
4 AAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCT
1 AAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGATGATCCATTCCTTCG
* * * * * * *
68 AGCAATTTTCCTAACATTCAATGACTAG-GAAACCGCATCATTTGGACTAAATAGTTTGTTATTT
65 AGCAATTTTTCGAACATTCCATG-CTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * * *
132 TGTAAACAAATTTTTGTTTTTGAATTAAAAAATTATTTACGTGAGAACTATTTCTCTCTTGGTTC
129 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* ** *
197 TTTGACAAAC-TTCTGAAGTTGTC
194 TTGGATGAACTTTC-GAACTTGTC
* * * *
220 AAACTTCTACGAGTTCTTTTATAACTTCCATTCTTTAAAGTATTCAAGATGATCCATTCCGTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
* * * * * *
285 --AATTTTTTTCAAACATTTCCATACTCGAGAAATCACATCATTTGGTCAAAATTGTTTGTCAAT
66 GCAA--TTTTTCGAACA-TTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
*** * *
348 TTGTAAACAGGATTTGGTCTTTGAATTAAAAATTTATTTACGTGAAAATTGTTTCTCTCTTGGTG
128 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-
* *
413 T-TTAGATGAACTTCCGAACTTGTC
192 TCTTGGATGAACTTTCGAACTTGTC
* * *
437 AAACTTTTACGAGTTCTTTTATTA--TAG-TTCCTCAAAGTATTCAAGATGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
* * * * * * *
499 GCAATTTTTCGAACAGTCCATACTTGAGAAATCTCATCAATTGTTCTAAATAGTTTGTTATTTTG
66 GCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* ** * * * * *
564 TATACATGTTTTGGTCTTTGAATTAAAAACTTATTTACAT-AGGAATTGTTTATCTCATAGATCT
131 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCT
* **
628 TGGATGAACTTTCAAACTTGAA
195 TGGATGAACTTTCGAACTTGTC
*
650 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAACTATTCAAGATGATCCATT-CTATCG
1 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCT-TCG
* *
714 AGCAATTTTTCGAACATTCCACGCTCGAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTT
65 AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * *
779 GTAAACAACTTTTGGTCTTTAAATT-AAAACTTATTTACGTGGGAATTGTTCCTCTCTTGGTTTT
130 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
843 TGGATGAAC-TTCTGAACTTGTC
195 TGGATGAACTTTC-GAACTTGTC
* * *
865 AAACTTTTACGAGTTCTTTTATAACTTCGTTTCATTACAGTATTCAAGATGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
* * * * * * * *
930 GGAACTTTTCGGACATTCCATTCTAGGGAAATCGCATCATTTGGTCTGAACAGTTTGTCATTTT-
66 GCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
994 T-TA-AACTTTTGGTCTTTGACTTAAAAACTTGTTTACGTGAGAGTTGATTCTCT-TTCGG-TCT
131 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCT
*
1055 TGGACGAACTTTCGAACTTGTC
195 TGGATGAACTTTCGAACTTGTC
* * * * * *
1077 AAACATTTATGAGTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
* * * * *
1142 GGAATTTTTCGAACATTCCATGCTCGGGAAAACGCATCATTTGGTCAAAATAGTGTGTCATTTTG
66 GCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* ** * * * * * * * *
1207 TAAACTAGATTAGGTCTTTGAATTTAAAACTTGTTTACGCGTGAATTATTTTTATCTTGGTTCTT
131 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* *
1272 GGACGAACTTTCAAACTTGTC
196 GGATGAACTTTCGAACTTGTC
* * * **
1293 AAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGCATTCAAGACAATCC-TCTCCTTCG
1 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCAT-TCCTTCG
* * * * * * * * *
1357 AGC-AGTTTTCCAAGCATTTCATACTC-AGGAAATCACTTCATCTAGTCTAAATAGTTTGTTATT
65 AGCAATTTTTCGAA-CATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* *
1420 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCATT-AT
128 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGT
* * * *
1484 TTTTTGATGAACTTCCAAACTTGTC
192 TCTTGGATGAACTTTCGAACTTGTC
* * * ** *
1509 AAACTTTTACGAGTTCTTTTATAATTTTGGTTTGTTATAGTATTCAAGATGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
* * * *
1574 GCAATTTTTTGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCT-AACAGTTTGTTATTTTG
66 GCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * *
1638 T---TAACTTTTGGTATTTGAATTAAAAACTTATTTTACGTGACAGTTATTTCTCTGTTGGTTCT
131 TAAACAACTTTTGGTCTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCT
*
1700 TGGATGAACTTTTGAACTTGTC
195 TGGATGAACTTTCGAACTTGTC
* * * ** *
1722 AAACATTTATGAGTTCATTTATAACTTC-AGTTCCTTAAAGTATTCAAGACAATTCATTCCTTCG
1 AAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGATGATCCATTCCTTCG
* * * * * * *
1786 AGCAATTTTTTGAACATTCCCTACTTGGGAAAACGCATTATTTAGG-CTAAATAGTTT-TCCATT
65 AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTT-GGTCTAAATAGTTTGT-CATT
* ** *** * ** * *
1849 TTGTAAACTAGATTACATCTTTGAA-TAAAAACTTGTTTACGCAAAAATTGTTTCTATCTTGGTT
128 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* * * *
1913 TTTGGACGAACTTCCAAACTTGTC
193 CTTGGATGAACTTTCGAACTTGTC
* * * * * *
1937 AAACTTCTATGCGTTCCTTTATAACTTCGATTCCTTAAAGTATTCAAGATAATCCTTTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
** * * *
2002 GCTGTTTTTCGAATATCCCAAGCTCG-GAAA
66 GCAATTTTTCGAACATTCCATGCTCGAGAAA
2032 ATTAAAAACA
Statistics
Matches: 1492, Mismatches: 277, Indels: 88
0.80 0.15 0.05
Matches are distributed among these distances:
212 181 0.12
213 295 0.20
214 69 0.05
215 341 0.23
216 456 0.31
217 147 0.10
218 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGA
GCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
GGATGAACTTTCGAACTTGTC
Found at i:1006 original size:428 final size:428
Alignment explanation
Indices: 4--2031 Score: 2052
Period size: 428 Copynumber: 4.7 Consensus size: 428
1 GTA
* *
4 AAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCTA
1 AAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * *
69 GCAATTTTCCTAACATTCAATGACTA-GGAAACCGCATCATTTGGACTAAATAGTTTGTTATTTT
65 GCAATTTTTCGAACATTCCAT-ACTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTT
* * * * * * *
133 GTAAACAAATTTTTGTTTTTGAATTAAAAAATTATTTACGTGAGAACTATTTCTCTCTTGGTTCT
129 TTAAAC---TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCT
* * * * * * *
198 TTGACAAAC-TTCTGAAGTTGTCAAACTTCTACGAGTTCTTTTATAACTTCCATTCTTTAAAGTA
191 TGGACGAACTTTC-AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTA
* * * *
262 TTCAAGATGATCCATTCCGTCGA--AATTTTTTTCAAACATTTCCATACTCGAGAAATCACATCA
255 TTCAAGATGATCCATTCCTTCGAGCAA--TTTTTCGAACA-TTCCATGCTCGAGAAATCGCATCA
* * ** * *
325 TTTGGTCAAAATTGTTTGTCAATTTGTAAACAGGATTTGGTCTTTGAATTAAAAATTTATTTACG
317 TTTGGTCAAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATTAAAAACTTATTTACG
* * * *
390 TGAAAATTGTTTCTCTCTTGGTGT-TTAGATGAACTTCCGAACTTGTC
382 TGAGAATTATTTCTCTCTTGGT-TCTTGGATGAACTTCTGAACTTGTC
* * * *
437 AAACTTTTACGAGTTCTTTTATTA--TAGTTCCTCAAAGTATTCAAGATGATCCATTCCTTCGAG
1 AAACTTTTACGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * *
500 CAATTTTTCGAACAGTCCATACTTGAGAAATCTCATCAATTGTTCTAAATAGTTTGTTATTTTGT
66 CAATTTTTCGAACATTCCATACTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTT-T
** * * * *
565 ATACATGTTTTGGTCTTTGAATTAAAAACTTATTTACAT-AGGAATTGTTTATCTCATAGATCTT
130 -TA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTAGTTCTT
* ** *
629 GGATGAACTTTCAAACTTGAAAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAACTATT
192 GGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT
* *
694 CAAGATGATCCATT-CTATCGAGCAATTTTTCGAACATTCCACGCTCGAGAAATCGCATCTTTTG
257 CAAGATGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTG
* * *
758 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATT-AAAACTTATTTACGTGGG
321 GTCAAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATTAAAAACTTATTTACGTGAG
* * *
822 AATTGTTCCTCTCTTGGTTTTTGGATGAACTTCTGAACTTGTC
386 AATTATTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTC
* * *
865 AAACTTTTACGAGTTCTTTTATAACTTCGTTTCATTACAGTATTCAAGATGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * * *
930 GGAACTTTTCGGACATTCCATTCTAGGGAAATCGCATCATTTGGTCTGAACAGTTTGTCATTTTT
65 GCAATTTTTCGAACATTCCATACTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTT
* * * * * *
995 TAAACTTTTGGTCTTTGACTTAAAAACTTGTTTACGTGAGAGTTGATTCTCT-TTCGGTCTTGGA
130 TAAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
* * * * * *
1059 CGAACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAA
195 CGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAA
* * * *
1124 GACGATCCATTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGGGAAAACGCATCATTTGGTCA
260 GATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCA
* * * * * * * * *
1189 AAATAGTGTGTCATTTTGTAAACTAGATTAGGTCTTTGAATTTAAAACTTGTTTACGCGTGAATT
325 AAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT
* * * *
1254 ATTTTTATCTTGGTTCTTGGACGAACTT-TCAAACTTGTC
390 ATTTCTCTCTTGGTTCTTGGATGAACTTCT-GAACTTGTC
* * * *
1293 AAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGCATTCAAGACAATCC-TCTCCTTCG
1 AAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCAT-TCCTTCG
* * * * * * *
1357 AGC-AGTTTTCCAAGCATTTCATACTCA-GGAAATCACTTCATCTAGTCTAAATAGTTTGTTATT
64 AGCAATTTTTCGAA-CATTCCATACT-AGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATT
* *
1420 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCATTA-T
127 TT-T-TA-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTAGT
* * * * * * * ** *
1484 TTTTTGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTTGGTTTGTTATAG
188 TCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAG
* *
1549 TATTCAAGATGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTTGAGAAATCGCATCAT
253 TATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAT
* * * * * * *
1614 TTGGTC-TAACAGTTTGTTATTTTGT---TAACTTTTGGTATTTGAATTAAAAACTTATTTTACG
318 TTGGTCAAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATTAAAAACTTA-TTTACG
* * * *
1675 TGACAGTTATTTCTCTGTTGGTTCTTGGATGAACTTTTGAACTTGTC
382 TGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTC
* * * * *
1722 AAACATTTATGAGTTCATTTATAACTTCAGTTCCTTAAAGTATTCAAGACAATTCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * *
1787 GCAATTTTTTGAACATTCCCTACTTGGGAAAACGCATTATTTAGG-CTAAATAGTTT-TCCATTT
65 GCAATTTTTCGAACATTCCATACTAGGGAAATCGCATCATTT-GGTCTAAATAGTTTGT-TATTT
* *** * ** * * * *
1850 TGTAAACTAGATTACATCTTTGAA-TAAAAACTTGTTTACGCAAAAATTGTTTCTATCTTGGTTT
128 TTTAAACT---TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTC
* * * * *
1914 TTGGACGAACTTCCAAACTTGTCAAACTTCTATGCGTTCCTTTATAACTTCGATTCCTTAAAGTA
190 TTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTA
* * ** * * *
1979 TTCAAGATAATCCTTTCCTTCGAGCTGTTTTTCGAATATCCCAAGCTCG-GAAA
255 TTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAA
2032 ATTAAAAACA
Statistics
Matches: 1316, Mismatches: 242, Indels: 80
0.80 0.15 0.05
Matches are distributed among these distances:
426 4 0.00
427 172 0.13
428 408 0.31
429 218 0.17
430 219 0.17
431 147 0.11
432 122 0.09
433 26 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (428 bp):
AAACTTTTACGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
CAATTTTTCGAACATTCCATACTAGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTTT
AAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
GAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG
ATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAA
AATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTA
TTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTC
Found at i:1909 original size:644 final size:636
Alignment explanation
Indices: 4--2009 Score: 2286
Period size: 644 Copynumber: 3.1 Consensus size: 636
1 GTA
* * * * * *
4 AAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCT
1 AAACTTCTACGAGTTCCTTTATAACTTCGA-TTCCTTAAAGCATTCAAGACAATCCATTCCTTCG
* * *
68 AGCAATTTTCCTAACA-TTCAATGACT-AGGAAACCGCATCATTTGGACTAAATAGTTTGTTATT
65 AGCAGTTTTCC-AACATTTC-AT-ACTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATT
* * * * *
131 TTGTAAACAAATTTTTGTTTTTGAATTAAAAAATTATTTACGTGAGAACTATTTCTCTCTTGGTT
127 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTT
* ** * * * *
196 CTTTGACAAACTTCTGAAGTTGTCAAACTTCTACGAGTTCTTTTATAACTTCCATTCTTTAAAGT
192 TTTTGATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-TTTCGTT-TTTAAAGT
* * * *
261 ATTCAAGATGATCCATTCCGTCGA-AATTTTTTTCAAACATTTCCATACTCGAGAAATCACATCA
255 ATTCAAGATGATCCATTCCTTCGAGAA-TTTTTT-GAACA-TTCCATACTAGAGAAATCGCATCA
* * * * *
325 TTTGGTC-AAAATTGTTTGTCAATTTGTAAACAGGATTTGGTCTTTGAATTAAAAATTTATTTAC
317 TTTGGTCTAACA--GTTTGTCATTTTGTTAAC---TTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * *
389 GTGAAAATTGTTTCTCTCTTGGTGT-TTAGATGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
377 GTGAAAGTTATTTCTCT-TTGGT-TCTTGGATGAACTTTCGAACTTGTCAAACATTTATGAGTTC
* * *
453 TTTTATTA--TAGTTCCTCAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACAGT
440 TTTTATAACTTAGTTCCTCAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATT
* * * * * * * * *
516 CCATACTTGAGAAATCTCATCAATTGTTCTAAATAGTTTGTTATTTTGTATAC-ATGTTTTGGTC
505 CCATACTTGGGAAAACGCATCATTTG-GCTAAATAGTTT-TCATTTTGTAAACTA-GATTAGGTC
* ** * * * * * *
580 TTTGAATTAAAAACTTATTTACATAGGAATTGTTTATCTCATAGATCTTGGATGAACTTTCAAAC
567 TTTGAATTAAAAACTTGTTTACGCAAGAATTGTTTATATCTTGGTTCTTGGACGAACTTTCAAAC
**
645 TTGAA
632 TTGTC
* * **
650 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAA-CTATTCAAGATGATCCATT-CTATC
1 AAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGC-ATTCAAGACAATCCATTCCT-TC
* * * ** * *
713 GAGCAATTTTTCGAACATTCCACGCTC-GAGAAATCGCATCTTTTGGTCTAAATAGTTTGTCATT
64 GAGC-AGTTTTCCAACATTTCATACTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTTATT
* * * *
777 TTGTAAACAACTTTTGGTCTTTAAATT-AAAACTTATTTACGTGGGAATTGTTCCTCTCTTGGTT
127 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTT
* * *
841 TTTGGATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTTCATTACAGT
192 TTTTGATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCGTTT--TTAAAGT
* * * * *
906 ATTCAAGATGATCCATTCCTTCGAGGAACTTTTCGGACATTCCATTCTAGGGAAATCGCATCATT
255 ATTCAAGATGATCCATTCCTTCGA-GAATTTTTTGAACATTCCATACTAGAGAAATCGCATCATT
* * *
971 TGGTCTGAACAGTTTGTCATTTT-TTAAACTTTTGGTCTTTGACTTAAAAACTTGTTTACGTGAG
319 TGGTCT-AACAGTTTGTCATTTTGTT-AACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAA
*
1035 AGTTGA-TTCTCTTTCGG-TCTTGGACGAACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTA
382 AGTT-ATTTCTCTTT-GGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTA
* * *
1098 TAACTTTGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGGAATTTTTCGAACATTCCAT
445 TAAC-TTAGTTCCTCAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAT
* * * *
1163 GCTCGGGAAAACGCATCATTTGGTCAAAATAGTGTGTCATTTTGTAAACTAGATTAGGTCTTTGA
509 ACTTGGGAAAACGCATCATTTGG-CTAAATAGT-TTTCATTTTGTAAACTAGATTAGGTCTTTGA
* ** * *
1228 ATTTAAAACTTGTTTACGCGTGAATTATTTTTATCTTGGTTCTTGGACGAACTTTCAAACTTGTC
572 ATTAAAAACTTGTTTACGCAAGAATTGTTTATATCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1293 AAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGCATTCAAGACAATCC-TCTCCTTCG
1 AAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGCATTCAAGACAATCCAT-TCCTTCG
* * * *
1357 AGCAGTTTTCCAAGCATTTCATACTCAGGAAATCACTTCATCTAGTCTAAATAGTTTGTTATTTT
65 AGCAGTTTTCCAA-CATTTCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTT
* *
1422 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCATT-ATTT
129 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTC-TTGGTTT
** * *
1486 TTTGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTTGGTTTGTTATAGTA
193 TTTGATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-TTTCGTTT-TTAAAGTA
* *
1551 TTCAAGATGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTTGAGAAATCGCATCATTT
256 TTCAAGATGATCCATTCCTTCGAG-AATTTTTTGAACATTCCATACTAGAGAAATCGCATCATTT
* * *
1616 GGTCTAACAGTTTGTTATTTTGTTAACTTTTGGTATTTGAATTAAAAACTTATTTTACGTGACAG
320 GGTCTAACAGTTTGTCATTTTGTTAACTTTTGGTCTTTGAATTAAAAACTTA-TTTACGTGAAAG
* *
1681 TTATTTCTCTGTTGGTTCTTGGATGAACTTTTGAACTTGTCAAACATTTATGAGTTCATTTATAA
384 TTATTTCTCT-TTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTATAA
* * * * *
1746 CTTCAGTTCCTTAAAGTATTCAAGACAATTCATTCCTTCGAGCAATTTTTTGAACATTCCCTACT
448 CTT-AGTTCCTCAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACT
* **
1811 TGGGAAAACGCATTATTTAGGCTAAATAGTTTTCCATTTTGTAAACTAGATTACATCTTTGAA-T
512 TGGGAAAACGCATCATTT-GGCTAAATAGTTTT-CATTTTGTAAACTAGATTAGGTCTTTGAATT
* * * *
1875 AAAAACTTGTTTACGCAAAAATTGTTTCTATCTTGGTTTTTGGACGAACTTCCAAACTTGTC
575 AAAAACTTGTTTACGCAAGAATTGTTTATATCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * * *
1937 AAACTTCTATGCGTTCCTTTATAACTTCGATTCCTTAAAGTATTCAAGATAATCCTTTCCTTCGA
1 AAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGCATTCAAGACAATCCATTCCTTCGA
*
2002 GCTGTTTT
66 GCAGTTTT
2010 TCGAATATCC
Statistics
Matches: 1162, Mismatches: 157, Indels: 84
0.83 0.11 0.06
Matches are distributed among these distances:
639 1 0.00
640 43 0.04
641 41 0.04
642 9 0.01
643 315 0.27
644 343 0.30
645 273 0.23
646 126 0.11
647 11 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (636 bp):
AAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGCATTCAAGACAATCCATTCCTTCGA
GCAGTTTTCCAACATTTCATACTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGT
AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTTTTT
GATGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCGTTTTTAAAGTATTCAA
GATGATCCATTCCTTCGAGAATTTTTTGAACATTCCATACTAGAGAAATCGCATCATTTGGTCTA
ACAGTTTGTCATTTTGTTAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAGTTATTTC
TCTTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTAGTTC
CTCAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTTGGGAAAAC
GCATCATTTGGCTAAATAGTTTTCATTTTGTAAACTAGATTAGGTCTTTGAATTAAAAACTTGTT
TACGCAAGAATTGTTTATATCTTGGTTCTTGGACGAACTTTCAAACTTGTC
Found at i:2559 original size:586 final size:588
Alignment explanation
Indices: 1443--2618 Score: 1422
Period size: 586 Copynumber: 2.0 Consensus size: 588
1433 TTGGTCTTTG
* * * * * * *
1443 AATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCATTATTTTTTGATGAACTTCCAAACTTGT
1 AATTAAAAACATATTTACATGAGAATTTTTTCTCTCATTATGTTTGGACGAACTACCAAACTCGT
* * ** * *
1508 CAAACTTTTACGAGTTCTTTTATAATTTTGGTTTGTTATAGTATTCAAGATGATCCATTCCTTCG
66 CAAACTTTTACGAATTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGATGATCCATTCCTTCG
* * * * **
1573 AGCAATTTTTTGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCTAACAGTTTGTTATTTTG
131 AGCAATTTTTCGAACATTCCATGC-TAAAAAATCGCATCATTTGGTATAACAGTTTGACATTTTG
* ** * * * *
1638 TTAACTTTTGGTATTTGAATTAAAAACTTATTTTACGTGACAGTTATTTCTCTGTTGGTTCTTGG
195 TAAACTTTTGGTATTACAATTAAAAACTTATTTTACATGACAATTATTTCTCTCTCGGTTCTTGG
** * *
1703 ATGAACTTTTGAACTTGTCAAACATTTATGAGTTCATTTATAACTTCAGTTCCTTAAAGTATTCA
260 ACAAACTTTCGAACTTGTCAAACATTTACGAGTTCATTTATAACTTCAGTTCCTTAAAGTATTCA
* ** * * *
1768 AGACAATTCATTCCTTCGAGCAATTTTTTGAACATTCCCTACTTGGGAAAACGCATTATTTAGGC
325 AGACAATCCATTCCTTCGAGCAATTTTCCGAACATTCCATACTCGGGAAAACACATTATTTAGGC
* *
1833 TAAATAGTTTTCCATTTTGTAAACTAGATTACATCTTTGAATAAAAACTTGTTTACGCAAAAATT
390 TAAATAGTTGTCCATTTTGTAAACTAGATTACATCTTTGAATAAAAACTTATTTACGCAAAAATT
* * ****
1898 GTTTCTATCTTGGTTTTTGGACGAACTTCCAAACTTGTCAAACTTCTATGCGTTCCTTTATAACT
455 GTTTCTATCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTCTACAAATTCCTTTATAACT
* * ** *
1963 TCGATTCCTTAAAGTATTCAAGATAATCCTTTCCTTCGAGCTGTTTTTCGAATATCCCAAGCTCG
520 TCGATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAACATCCCAAGCTCG
2028 -GAA
585 AGAA
* *
2031 AATTAAAAACATATTTACATGAG-ATTTGTTTCTCTC-TTGGTGTTTGGACGAACTACCGAACTC
1 AATTAAAAACATATTTACATGAGAATTT-TTTCTCTCATT-ATGTTTGGACGAACTACCAAACTC
*
2094 GTCAAACTTTTACGAATTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGATGATCTATTCCTT
64 GTCAAACTTTTACGAATTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGATGATCCATTCCTT
* * * *
2159 CGAGCAATTTTTCGATCATTCCTTGC-AAAAAATTGCATCATTTGGTATAAATAGTTTGACATTT
129 CGAGCAATTTTTCGAACATTCCATGCTAAAAAATCGCATCATTTGGTAT-AACAGTTTGACATTT
* *
2223 TGTAAAAAACTTTTGGTCTTACAATTAAAAACTTA-TTTACATG-CAAATTGTTTC-C-CTCGGT
193 TGT---AAACTTTTGGTATTACAATTAAAAACTTATTTTACATGAC-AATTATTTCTCTCTCGGT
* * *
2284 TCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
254 TCTTGGACAAACTTTCGAACTTGTCAAACATTTACGAGTTCATTTATAACTTCAGTTCCTTAAAG
* * * * * *
2349 TATTTAAGACAGTCCATTCCTTTGAGTAATTTTCCGAACA-TCCATGCTCGGGAAATCACATTAT
319 TATTCAAGACAATCCATTCCTTCGAGCAATTTTCCGAACATTCCATACTCGGGAAAACACATTAT
* *** *
2413 TT-GGTCTAAATAGTTGGT-CATTTTGTAAAC-AGTTTTGGTCTTTGAGTTAAAAACTTATTTAC
384 TTAGG-CTAAATAGTT-GTCCATTTTGTAAACTAGATTACATCTTTGA-ATAAAAACTTATTTAC
*** * * * *
2475 TTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACAAATTCT
446 GCAAAAATTGTTTCTATCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTCTACAAATTCC
* * *
2540 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATT
511 TTTATAACTTCGATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAACATC
*
2605 CCATGCTCGAGAA
576 CCAAGCTCGAGAA
2618 A
1 A
2619 TCGCATCATT
Statistics
Matches: 494, Mismatches: 83, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
585 13 0.03
586 192 0.39
587 121 0.24
588 129 0.26
589 14 0.03
590 25 0.05
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (588 bp):
AATTAAAAACATATTTACATGAGAATTTTTTCTCTCATTATGTTTGGACGAACTACCAAACTCGT
CAAACTTTTACGAATTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGATGATCCATTCCTTCG
AGCAATTTTTCGAACATTCCATGCTAAAAAATCGCATCATTTGGTATAACAGTTTGACATTTTGT
AAACTTTTGGTATTACAATTAAAAACTTATTTTACATGACAATTATTTCTCTCTCGGTTCTTGGA
CAAACTTTCGAACTTGTCAAACATTTACGAGTTCATTTATAACTTCAGTTCCTTAAAGTATTCAA
GACAATCCATTCCTTCGAGCAATTTTCCGAACATTCCATACTCGGGAAAACACATTATTTAGGCT
AAATAGTTGTCCATTTTGTAAACTAGATTACATCTTTGAATAAAAACTTATTTACGCAAAAATTG
TTTCTATCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTCTACAAATTCCTTTATAACTT
CGATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTTCGAACATCCCAAGCTCGA
GAA
Found at i:2760 original size:216 final size:216
Alignment explanation
Indices: 2031--5120 Score: 3290
Period size: 216 Copynumber: 14.4 Consensus size: 216
2021 AAGCTCGGAA
* * ** *
2031 AATTAAAAACATATTTACATGAGATTTGTTTCTCTCTTGGTGT-TTGGACGAACTACCGAACTCG
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTCGAACTTG
* * * * *
2095 TCAAACTTTTACGAATTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGATGATCTATTCCTTC
65 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * *
2160 GAGCAATTTTTCGATCATTCCTTG--CAAAAAATTGCATCATTTGGTATAAATAGTTTGACATTT
130 GAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * **
2223 TGTAAAAAACTTTTGGTCTTAC
195 TGTAAACAAGTTTTGGTCTTTG
* *
2245 AATTAAAAACTTATTTACATGCA-AATTGTTTC-C-CTCGGTTCTTGGACAAACTTTCGAACTTG
1 AATTAAAAACTTATTTACATG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
*
2307 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTTAAGAC-AGTCCATTCCTT
65 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTT
* * * * * * *
2371 TGAGTAATTTTCCGAACA-TCCATGCTCGGGAAATCACATTATTTGGTCTAAATAGTTGGTCATT
129 CGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
2435 TTGTAAAC-AGTTTTGGTCTTTG
194 TTGTAAACAAGTTTTGGTCTTTG
* * * * *
2457 AGTTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGT
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
* *
2522 CAAACTTTTACAAATTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
66 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* **
2587 AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGTTCTAAATAGTTT-TTTTTTT
131 AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
2651 GTAAACAAGTTTTTGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
* * * *
2672 AATTAAAAAACTTAGTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTG
1 AATT-AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
* * * * *
2737 TCAAACTTTTTCGAGTTCTTTTATAACTTCGATTCCTTAAATTATTCAAGACAATACATTCCTTC
65 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * *
2802 AAGCTATTTTTCAAACATTCCATGCTC-AGGAAATCGCATGATATGGTCAAAATAGTTTGTC-TT
130 GAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
2865 TCTGTAAACATGTTTTAGCCTTTG
194 T-TGTAAACAAGTTTTGGTCTTTG
* * * * * * *
2889 AATCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGATCTTTGACGAACTTCCAAACTTGA
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
* * * * **
2954 AAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAATATTC-AGAATGATATATTCCTTC
66 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG-ACGATCCATTCCTTC
* * * * * * * * *
3018 AAGCAATTTTTTGAACATTCCACGCTCGGGCAATCACATCATCTGGTCTAAAGAGATTGTCATTT
130 GAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
*
3083 TGTAAACAACTTTTGGTCTTTG
195 TGTAAACAAGTTTTGGTCTTTG
* * * * * *
3105 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTTTTGGATGAAC-TTCTGTACTAG
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTG
* * *
3169 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCGTTACAGTATTCAAGACGATCCATACCTTC
65 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * * * * *
3234 GAGTAACTTTCCAAACATTCCATGCTCGGGAAACCACAT-AATTGAGTCT-AATTGTTTGTCATT
130 GAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATAGTTTGTCATT
*
3297 TTTTAAAC---TTTTGGTCTTT-
194 TTGTAAACAAGTTTTGGTCTTTG
* * * * * *
3316 AACTTAAAAACTTATTTACGTGAGAGTTGTTTCTCTTTTGGTTCTTGGATGAACTTCCAAACTTG
1 AA-TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
* * * * *
3381 TCAAACATTTATGAGTTCTTTTATAACTTTGGTTTC-TAACAGTGTTCAAGACGA-CTCATTCCT
65 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AGTATTCAAGACGATC-CATTCCT
* * * * * * *
3444 TCGAGGAA-TCTTCTAAACATTCCATGCTAGGGAAAACGCATCATTTGGTCGAAATAGTTT-TCC
128 TCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT-C
* * *
3507 A-TTTGTAAACTAGATTAGGTCTTTG
191 ATTTTGTAAACAAGTTTTGGTCTTTG
* * *
3532 AATTAAAAACTTCTTT--ATGCAAGAATTGTTTC-CATCTTGGTTCTTGGACGAACTTCCAAACT
1 AATTAAAAACTTATTTACATG--AGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTTTCGAACT
* * * * * * *
3594 TGTCAAACTTCTACAAGTTCCTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATACTTTCCT
63 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * ** *** * *
3659 TCGAGCAGTTTTTCGAACATACCAAACTCGAGTTTTCGCGTCATTTTGTCTAAATAGTATT-TCA
128 TCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT-TTGTCA
*
3723 TTTTGTAAACAAGCTTTGGTCTTTG
192 TTTTGTAAACAAGTTTTGGTCTTTG
* *
3748 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTATTGGACAAACTTTCGAACTTGT
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
* * * * * * * *
3813 CAAACTTTTTCAAGTTCTTTTATAACTTCGATTCCTTACAGTATTCAATACGATACATTACTTCA
66 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * *
3878 AGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
131 AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
3943 CTAAACATGTTTTGGTCTTTG
196 GTAAACAAGTTTTGGTCTTTG
* * * * * *
3964 AATTAAAAACTTATTTAGAAGAGAATTGTTTCTCTCTTTGATCTTTGACAAACTTTCGAACTTTG
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC-TTG
** *
4029 AAAAACTTTTAC-A--------ATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTC
65 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * *
4085 AATCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATCTAGTCTAAATAGTTTATCATTT
130 GAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* *
4150 TGTATACAACTTTTGGTCTTTG
195 TGTAAACAAGTTTTGGTCTTTG
* * * *
4172 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGATGAACCTTCGAACTTGT
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
* * * *
4237 CAAACTTTTACGAGTTCTTTTATAACTTTGGTTCGTTATAGTATTCAGGACGATCCATTCCTTCG
66 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* *
4302 AGCAATTTTTCGTACATTCCATGCTCTG-GAAATCACATCATTTGGTGC-AAATAGTTTGTCATT
131 AGCAATTTTTCGAACATTCCATGCTC-GAGAAATCGCATCATTTGGT-CTAAATAGTTTGTCATT
*
4365 TCGTAAAC---TTTTGGTCTTTG
194 TTGTAAACAAGTTTTGGTCTTTG
* * * * *
4385 AATTAAAAAATCATTTACATCAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGT
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
* * *
4450 CAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAACCCATTCCTTCG
66 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * *
4515 AGCAATTTTTCGAACATTCCATGCTC-AGAAAATCACATCAGTTGGTCTAAATAGTTTGCCATTT
131 AGCAATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * *
4579 TGTAAACTAGTTTAGGTTTTTG
195 TGTAAACAAGTTTTGGTCTTTG
* * * *
4601 AATTAAAAACTTATTTACATGAGAATTGTTTCTATCTTTGTTCTTGGACAAAC-TTCTAAACTTG
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTG
* * * * * * *
4665 TCAAACTTATACGAGTTCCTTTATAAAATT-GATTCCTTAAAGTATTCAAGATGATCCTTTACTT
65 TCAAACTTTTACGAGTTCTTTTAT-AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * ** *
4729 CGAGCAGTTTTCCGAACATTCCATGATC-AGGATTTCGCATCATTTTGTCT-AATA--TT-TCAT
129 CGAGCAATTTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * *
4789 TTTAT-AACAAGTTTTCGCCTTTG
193 TTTGTAAACAAGTTTTGGTCTTTG
* * * * * *
4812 AATTAAAAACTTATTTACATAAGAATTGTTTCTATCTCGGTGT-TTGGACGAACTTCCAAACTAG
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTCGAACTTG
* * * *
4876 TCAAACTTTTACGAGTTTTTTTATAACTTCGATTTCTTAAAGTATTCAAGACGATCCATTGCTTC
65 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * ** *
4941 GAGCAAATTTTT-GAACATTCCATGTTC-CGAAATTTCATCATTTGGTCTAAATAGTTTGACATT
130 GAGC-AATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* *
5004 TAGTAAACAACTTTTGGTCTTAT-
194 TTGTAAACAAGTTTTGGTCTT-TG
** * * * * * * *
5027 AATTAAAAACTTATTTAGGTAAGAGTTATTTCTCTC--AGTTCTTGGACAAACTTCCCAAACTTG
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TCGAACTTG
*
5090 TCAAACTTTTACGAGTTCTTTTATCACTTCG
65 TCAAACTTTTACGAGTTCTTTTATAACTTCG
5121 ATTTTGATGT
Statistics
Matches: 2411, Mismatches: 387, Indels: 156
0.82 0.13 0.05
Matches are distributed among these distances:
207 13 0.01
208 166 0.07
210 19 0.01
211 156 0.06
212 304 0.13
213 260 0.11
214 183 0.08
215 277 0.11
216 982 0.41
217 48 0.02
218 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
GTAAACAAGTTTTGGTCTTTG
Found at i:3941 original size:859 final size:852
Alignment explanation
Indices: 2031--5118 Score: 3332
Period size: 859 Copynumber: 3.6 Consensus size: 852
2021 AAGCTCGGAA
* * * * * *
2031 AATTAAAAACATATTTACATGAGATTTGTTTCTCTCTTGGTGT-TTGGACGAACTACCGAACTCG
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGT-TCTTGGACAAACTTCCAAACTTG
* * * *
2095 TCAAACTTTTACGAA-TTCTTTTATAACTTTGGTTCCTCAAAGTATTCAAGATGAT-CTATTCCT
65 TCAAACTTTTAC-AAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATAC-ATTACT
* * * ** * *
2158 TCGAGCAATTTTTCGATCATTCCTTG--CAAAAAATTGCATCATTTGGT-ATAAATAGTTTGACA
128 TCAAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCA-AAATAGTTTGTCA
* **
2220 TTTTGTAAAAAACTTTTGGTCTTACAATTAAAAACTTATTTACATGCA-AATTGTTTC-C-CTCG
192 TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATG-AGAATTGTTTCTCTCTCG
* *
2282 GTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
256 GTTTTTGGACAAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* *
2347 AGTATTTAAGAC-AGTCCATTCCTTTGAGTAATTTTCCGAACA-TCCATGCTCGGGAAATCACAT
321 AGTATTCAAGACGA-TCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCTCGGGAAATCACA-
* * * *
2410 TATTTGGTCTAAATAGTTGGTCATTTTGTA-AACAGTTTTGGTCTTTGAGTTAAAAACTTATTTA
384 TAATTGGTCTAAATAGTTTGTCATTTTTTACAAC--TTTTGGTCTTT-AATTAAAAACTTATTTA
* * *
2474 CTTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACAAATTC
446 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAGTTC
* * * *
2539 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
511 TTTTATAACTTTGGTTTCGTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA--TTTCTAACAT
* * * ** * *
2604 TCCATGCTCGAGAAATCGCATCATTTGTTCTAAATAGTTTTTTTTTTGTAAACAAGTTTTTGTCT
574 TCCATGCTCGGGAAATCGCATCATTTGGTCGAAATAG-TTTTCATTTGTAAACTAG-TTTGGTCT
** *
2669 TTGAATTAAAAAACTTAGTTACGTG-AA-AATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGA
637 TTGAATT-AAAAACTTCTTTA--TGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGA
* *
2732 ACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGATTCCTTAAATTATTCAAGACAATACATT
699 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACAATACATT
* * * * *
2797 CCTTCAAGCTATTTTTCAAACATTCCATGCTCAGGAAATCGCATGATATGGTCAAAATAGTTTGT
764 CCTTCGAGC-ATTTTTCGAACATTCCATGCTCA-GAAATCGCATCATTTGGTCTAAATAGTTTGT
* * *
2862 C-TTTCTGTAAACATGTTTTAGCCTTTG
827 CATTT-TGTAAACAAG-TTTGGTCTTTG
* * * * * *
2889 AATCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGATCTTTGACGAACTTCCAAACTTGA
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGT
* * * * *
2954 AAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTTAAAATATTC-AGAATGATATATTCCTT
66 CAAACTTTTACAAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAG-ATGATACATTACTT
* * * * * * * * *
3017 CAAGCAATTTTTTGAACATTCCACGCTCGGGCAATCACATCATCTGGTCTAAAGAGATTGTCATT
129 CAAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATT
* **
3082 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTT
194 TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTT
** * * *
3147 TTTGGATGAAC-TTCTGTACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCGTTACAG
259 TTTGGACAAACTTTC-GAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * *
3211 TATTCAAGACGATCCATACCTTCGAGTAACTTTCCAAACATTCCATGCTCGGGAAACCACATAAT
323 TATTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCTCGGGAAATCACATAAT
*
3276 TGAGTCT-AATTGTTTGTCATTTTTTA-AACTTTTGGTCTTTAACTTAAAAACTTATTTACGTGA
388 TG-GTCTAAATAGTTTGTCATTTTTTACAACTTTTGGTCTTTAA-TTAAAAACTTATTTACGTGA
* * ** * *
3339 GAGTTGTTTCTCTTTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACATTTATGAGTTCTTTTA
451 GAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTA
* *
3404 TAACTTTGGTTTC-TAACAGTGTTCAAGACGA-CTCATTCCTTCGAGGAATCTTCTAAACATTCC
516 TAACTTTGGTTTCGTAA-AGTATTCAAGACGATC-CATTCCTTCGAGCAAT-TTCT-AACATTCC
* * *
3467 ATGCTAGGGAAAACGCATCATTTGGTCGAAATAGTTTTCCATTTGTAAACTAGATTAGGTCTTTG
577 ATGCTCGGGAAATCGCATCATTTGGTCGAAATAGTTTT-CATTTGTAAACTAG-TTTGGTCTTTG
* *
3532 AATTAAAAACTTCTTTATGCAAGAATTGTTTC-CATCTTGGTTCTTGGACGAACTTCCAAACTTG
640 AATTAAAAACTTCTTTATGCAAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTTTCGAACTTG
* * * ** *
3596 TCAAACTTCTACAAGTTCCTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATACTTTCCTTC
704 TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACAATACATTCCTTC
* ** *** * *
3661 GAGCAGTTTTTCGAACATACCAAACTCGAGTTTTCGCGTCATTTTGTCTAAATAGTATT-TCATT
769 GAGCA-TTTTTCGAACATTCCATGCTC-AGAAATCGCATCATTTGGTCTAAATAGT-TTGTCATT
3725 TTGTAAACAAGCTTTGGTCTTTG
831 TTGTAAACAAG-TTTGGTCTTTG
* * *
3748 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTATTGGACAAACTTTCGAACTTGT
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGT
* * * *
3813 CAAACTTTTTCAAGTTCTTTTATAACTTCGATTCCTTACAGTATTCAATACGATACATTACTTCA
66 CAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATACATTACTTCA
* *
3878 AGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
131 AGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
* ** * * * * *
3943 CTAAACATGTTTTGGTCTTTGAATTAAAAACTTATTTAGAAGAGAATTGTTTCTCTCTTTGATCT
196 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC-TCGGTTT
* **
4008 TT-GACAAACTTTCGAACTTTGAAAAACTTTTAC-A--------ATAACTTCGGTTCCTTAAAGT
260 TTGGACAAACTTTCGAAC-TAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
* * * * *
4063 ATTCAAGATGATCCATTCCTTC-AATCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
324 ATTCAAGACGATCCATTCCTTCGAGT-AATTTTCCGAACATTCCATGCTCGGGAAATCACATAAT
* *
4127 CTAGTCTAAATAGTTTATCATTTTGTATACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
388 -TGGTCTAAATAGTTTGTCATTTT-T-TACAACTTTTGGTCTTT-AATTAAAAACTTATTTACGT
* * * *
4192 GAGAATTGTTTCTCTCTTGGTTTTTGGATGAACCTT-CGAACTTGTCAAACTTTTACGAGTTCTT
449 GAGAATTGTTTCTCTCTTGGTTCTTGGA-CAAACTTCCAAACTTGTCAAACTTTTACGAGTTCTT
* *
4256 TTATAACTTTGG-TTCGTTATAGTATTCAGGACGATCCATTCCTTCGAGCAATTTTTCGT-ACAT
513 TTATAACTTTGGTTTCG-TAAAGTATTCAAGACGATCCATTCCTTCGAGCAA--TTTC-TAACAT
* *
4319 TCCATGCTCTGGAAATCACATCATTTGGT-GCAAATAGTTTGTCATTTCGTAAACT--TTTGGTC
574 TCCATGCTCGGGAAATCGCATCATTTGGTCG-AAATAGTTT-TCATTT-GTAAACTAGTTTGGTC
* * *
4381 TTTGAATTAAAAA-ATCATTTA--CATCAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTCG
636 TTTGAATTAAAAACTTC-TTTATGCA--AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCG
* * **
4443 AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAACCCAT
698 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACAATACAT
* *
4508 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGAAAATCACATCAGTTGGTCTAAATAGTTTG
763 TCCTTCGAGC-ATTTTTCGAACATTCCATGCTCAG-AAATCGCATCATTTGGTCTAAATAGTTTG
* * *
4573 CCATTTTGTAAACTAGTTTAGGTTTTTG
826 TCATTTTGTAAACAAGTTT-GGTCTTTG
* * *
4601 AATTAAAAACTTATTTACATGAGAATTGTTTCTATCTTTGTTCTTGGACAAACTTCTAAACTTGT
1 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGT
* * * * * *
4666 CAAACTTATACGAGTTCCTTTATAAAATT-GATTCCTTAAAGTATTCAAGATGATCCTTTACTTC
66 CAAACTTTTACAAGTTCTTTTAT-AACTTCGATTCCTTAAAGTATTCAAGATGATACATTACTTC
* * * * ** * *
4730 GAGCAGTTTTCCGAACATTCCATGATCAGGATTTCGCATCATTTTGTC-TAATA--TT-TCATTT
130 AAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTT
* * * * * * *
4791 TAT-AACAAGTTTTCGCCTTTGAATTAAAAACTTATTTACATAAGAATTGTTTCTATCTCGGTGT
195 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTT
* * * * * *
4855 TTGGACGAACTTCCAAACTAGTCAAACTTTTACGAGTTTTTTTATAACTTCGATTTCTTAAAGTA
260 TTGGACAAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * ** *
4920 TTCAAGACGATCCATTGCTTCGAGCAAATTTT-TGAACATTCCATGTTC-CGAAATTTCATCATT
325 TTCAAGACGATCCATTCCTTCGAG-TAATTTTCCGAACATTCCATGCTCGGGAAATCACAT-AAT
* ** * *
4983 TGGTCTAAATAGTTTGACATTTAGTAAACAACTTTTGGTCTTATAATTAAAAACTTATTTAGGTA
388 TGGTCTAAATAGTTTGTCATTT--TTTACAACTTTTGGTCTT-TAATTAAAAACTTATTTACGTG
* * *
5048 AGAGTTATTTCTCTC--AGTTCTTGGACAAACTTCCCAAACTTGTCAAACTTTTACGAGTTCTTT
450 AGAATTGTTTCTCTCTTGGTTCTTGGACAAACTT-CCAAACTTGTCAAACTTTTACGAGTTCTTT
*
5111 TATCACTT
514 TATAACTT
5119 CGATTTTGAT
Statistics
Matches: 1870, Mismatches: 283, Indels: 158
0.81 0.12 0.07
Matches are distributed among these distances:
847 18 0.01
848 60 0.03
849 8 0.00
850 4 0.00
851 77 0.04
852 33 0.02
853 333 0.18
854 47 0.03
855 237 0.13
856 75 0.04
857 16 0.01
858 127 0.07
859 402 0.21
860 290 0.16
861 4 0.00
862 115 0.06
863 24 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (852 bp):
AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGT
CAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGATACATTACTTCA
AGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATTTT
GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTTT
TGGACAAACTTTCGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
TCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCTCGGGAAATCACATAATTGG
TCTAAATAGTTTGTCATTTTTTACAACTTTTGGTCTTTAATTAAAAACTTATTTACGTGAGAATT
GTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
TTGGTTTCGTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCTAACATTCCATGCTCGGG
AAATCGCATCATTTGGTCGAAATAGTTTTCATTTGTAAACTAGTTTGGTCTTTGAATTAAAAACT
TCTTTATGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTAC
GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACAATACATTCCTTCGAGCATTTTTCG
AACATTCCATGCTCAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTG
GTCTTTG
Done.