Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007652.1 Kokia drynarioides strain JFW-HI SEQ_122283, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6646
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.37


Found at i:1966 original size:24 final size:24

Alignment explanation


    Indices: 1883--1957  Score: 132
    Period size: 24  Copynumber: 3.1  Consensus size: 24

       1873 AGAAATAATC

                                *   
       1883 TTTCAATTAAACTCTGTTTAATTG
          1 TTTCAATTAAACTCTGTTTATTTG

                           *        
       1907 TTTCAATTAAACTCTATTTATTTG
          1 TTTCAATTAAACTCTGTTTATTTG

                                    
       1931 TTTCAATTAAACTCTGTTTATTTG
          1 TTTCAATTAAACTCTGTTTATTTG

               
       1955 TTT
          1 TTT

       1958 GAGTCAAACG


Statistics
Matches: 48,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   48  1.00

ACGTcount: A:0.27, C:0.12, G:0.07, T:0.55


Consensus pattern (24 bp):   
TTTCAATTAAACTCTGTTTATTTG

Found at i:3917 original size:24 final size:24

Alignment explanation


    Indices: 3889--3951  Score: 81
    Period size: 24  Copynumber: 2.6  Consensus size: 24

       3879 AGAAATAATC

                         * *        
       3889 TTTCAGTTAAACTTTGTTTATTTG
          1 TTTCAGTTAAACTCTATTTATTTG

                 *                  
       3913 TTTCAATTAAACTCTATTTATTTG
          1 TTTCAGTTAAACTCTATTTATTTG

               *   *       
       3937 TTTGAGTCAAACTCT
          1 TTTCAGTTAAACTCT

       3952 TATTAGTCTA


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.25, C:0.13, G:0.10, T:0.52


Consensus pattern (24 bp):   
TTTCAGTTAAACTCTATTTATTTG
Done.