Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007663.1 Kokia drynarioides strain JFW-HI SEQ_122294, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2235
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26


Found at i:2186 original size:18 final size:18

Alignment explanation


    Indices: 2163--2197  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2153 CATTTAATAC

                        *     
       2163 TGTTCCTTGTAATTATTT
          1 TGTTCCTTGTAAATATTT

                             
       2181 TGTTCCTTGTAAATATT
          1 TGTTCCTTGTAAATATT

       2198 CGGTAATTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57


Consensus pattern (18 bp):   
TGTTCCTTGTAAATATTT
Done.