Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007669.1 Kokia drynarioides strain JFW-HI SEQ_122300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4181
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:1352 original size:14 final size:14

Alignment explanation


    Indices: 1333--1361  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1323 GGAGTCAGTT

                          
       1333 TTCCAGTAAAGGAG
          1 TTCCAGTAAAGGAG

                          
       1347 TTCCAGTAAAGGAG
          1 TTCCAGTAAAGGAG

             
       1361 T
          1 T

       1362 CAACCAAGCG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24


Consensus pattern (14 bp):   
TTCCAGTAAAGGAG
Done.