Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007673.1 Kokia drynarioides strain JFW-HI SEQ_122304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1987
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38


Found at i:858 original size:21 final size:21

Alignment explanation


    Indices: 832--874  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        822 TATATTTTTT

                                 
        832 AATTTAAGGGTTAAAGAGTTA
          1 AATTTAAGGGTTAAAGAGTTA

                                 
        853 AATTTAAGGGTTAAAGAGTTA
          1 AATTTAAGGGTTAAAGAGTTA

             
        874 A
          1 A

        875 GTTAAACTAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.44, C:0.00, G:0.23, T:0.33


Consensus pattern (21 bp):   
AATTTAAGGGTTAAAGAGTTA
Done.