Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007674.1 Kokia drynarioides strain JFW-HI SEQ_122305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1548
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Found at i:249 original size:21 final size:21

Alignment explanation


    Indices: 225--267  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        215 ATAGTTTAAC

                                 
        225 TTAACTCTTTAACCCTTAAAT
          1 TTAACTCTTTAACCCTTAAAT

                                 
        246 TTAACTCTTTAACCCTTAAAT
          1 TTAACTCTTTAACCCTTAAAT

             
        267 T
          1 T

        268 AAAAAATATA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44


Consensus pattern (21 bp):   
TTAACTCTTTAACCCTTAAAT
Done.