Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007676.1 Kokia drynarioides strain JFW-HI SEQ_122307, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6937
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:2658 original size:18 final size:18

Alignment explanation


    Indices: 2635--2680  Score: 56
    Period size: 19  Copynumber: 2.5  Consensus size: 18

       2625 CTATTTATAT

                       *      
       2635 TATTGAATTTTTTAATAA
          1 TATTGAATTTTATAATAA

                           *   
       2653 TATTGAATATTTATATTAA
          1 TATTGAAT-TTTATAATAA

            *        
       2672 AATTGAATT
          1 TATTGAATT

       2681 ATTAATGATA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  18    9  0.38
  19   15  0.62

ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52


Consensus pattern (18 bp):   
TATTGAATTTTATAATAA

Done.