Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007677.1 Kokia drynarioides strain JFW-HI SEQ_122308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3080
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.40


Found at i:2493 original size:23 final size:26

Alignment explanation


    Indices: 2444--2494  Score: 63
    Period size: 23  Copynumber: 2.1  Consensus size: 26

       2434 CATTAAAATA

                                 **   
       2444 AAAAATAATATATTTTAATATTTATT
          1 AAAAATAATATATTTTAATATCAATT

                                      
       2470 AAAAAT-A-ATATTTT-ATATCAATT
          1 AAAAATAATATATTTTAATATCAATT

              
       2493 AA
          1 AA

       2495 TGTCCATTAG


Statistics
Matches: 23,  Mismatches: 2, Indels: 3
        0.82            0.07        0.11

Matches are distributed among these distances:
  23    9  0.39
  24    7  0.30
  25    1  0.04
  26    6  0.26

ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45


Consensus pattern (26 bp):   
AAAAATAATATATTTTAATATCAATT
Done.