Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007680.1 Kokia drynarioides strain JFW-HI SEQ_122311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6682
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:1695 original size:24 final size:24

Alignment explanation


    Indices: 1667--1725  Score: 82
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       1657 TAGATTAATA

                   *                
       1667 AGAGTTTGACTCAAACAAATAAAC
          1 AGAGTTTAACTCAAACAAATAAAC

                     * *           *
       1691 AGAGTTTAATTGAAACAAATAAAT
          1 AGAGTTTAACTCAAACAAATAAAC

                       
       1715 AGAGTTTAACT
          1 AGAGTTTAACT

       1726 AAAAGATTAT


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.49, C:0.10, G:0.14, T:0.27


Consensus pattern (24 bp):   
AGAGTTTAACTCAAACAAATAAAC

Found at i:2431 original size:2 final size:2

Alignment explanation


    Indices: 2424--2449  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       2414 ACTTTCACTC

                                                  
       2424 GT GT GT GT GT GT GT GT GT GT GT GT GT
          1 GT GT GT GT GT GT GT GT GT GT GT GT GT

       2450 ATATATATAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50


Consensus pattern (2 bp):   
GT

Done.