Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000769.1 Kokia drynarioides strain JFW-HI SEQ_111823, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2258
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32


Found at i:1097 original size:100 final size:100

Alignment explanation


    Indices: 917--1114  Score: 283
    Period size: 100  Copynumber: 2.0  Consensus size: 100

        907 TTTGTATTTT

                              *            *                  *              
        917 TACAATTAAGTCCCCTTTTAAACCATAATATCTGAAATGCTCGTATATCTTAATTTTCCAGATCG
          1 TACAATTAAGTCCCCTTTCAAACCATAATATATGAAATGCTCGTATATCTCAATTTTCCAGATCG

                                               
        982 AATCAAAACCCGACTTCACATTCATTCACTAAGGA
         66 AATCAAAACCCGACTTCACATTCATTCACTAAGGA

                                         *                             *   * 
       1017 TACAATTAAGTCCCCTTTCAAACCATAATGTATGAAATGCTCGTA-ACTCTCAATTTTTTC-GGT
          1 TACAATTAAGTCCCCTTTCAAACCATAATATATGAAATGCTCGTATA-TCTCAA-TTTTCCAGAT

                      ***                      
       1080 CGAATCAAAATTTGACTTCACATTCATTCACTAAG
         64 CGAATCAAAACCCGACTTCACATTCATTCACTAAG

       1115 AACCTCGTAC


Statistics
Matches: 87,  Mismatches: 9, Indels: 4
        0.87            0.09        0.04

Matches are distributed among these distances:
  99    1  0.01
 100   81  0.93
 101    5  0.06

ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33


Consensus pattern (100 bp):   
TACAATTAAGTCCCCTTTCAAACCATAATATATGAAATGCTCGTATATCTCAATTTTCCAGATCG
AATCAAAACCCGACTTCACATTCATTCACTAAGGA
Done.