Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007690.1 Kokia drynarioides strain JFW-HI SEQ_122321, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5592
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:1460 original size:18 final size:17

Alignment explanation


    Indices: 1439--1472  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

       1429 ATATTAAGCC

                *             
       1439 ATTTTATTATAAGATATT
          1 ATTTAATTATAA-ATATT

                            
       1457 ATTTAATTATAAATAT
          1 ATTTAATTATAAATAT

       1473 CAATATTAAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    4  0.27
  18   11  0.73

ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53


Consensus pattern (17 bp):   
ATTTAATTATAAATATT

Found at i:1941 original size:22 final size:23

Alignment explanation


    Indices: 1890--1943  Score: 58
    Period size: 25  Copynumber: 2.3  Consensus size: 23

       1880 TATATTCTTG

                           *       
       1890 GTATAATATTTATTTTTCATAAT
          1 GTATAATATTTATTTATCATAAT

                                     
       1913 GTTTATAATATTT-TTTAT-ATAAT
          1 G--TATAATATTTATTTATCATAAT

                    
       1936 AGTATAAT
          1 -GTATAAT

       1944 TTACTGAAAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 7
        0.77            0.03        0.20

Matches are distributed among these distances:
  22    6  0.22
  23    6  0.22
  24    5  0.19
  25   10  0.37

ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56


Consensus pattern (23 bp):   
GTATAATATTTATTTATCATAAT
Done.