Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007701.1 Kokia drynarioides strain JFW-HI SEQ_122332, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4150
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34


Found at i:728 original size:13 final size:13

Alignment explanation


    Indices: 710--734  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        700 TAAAGTTTTC

                         
        710 TTTTAATTATTTA
          1 TTTTAATTATTTA

                        
        723 TTTTAATTATTT
          1 TTTTAATTATTT

        735 TCGTTTCAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72


Consensus pattern (13 bp):   
TTTTAATTATTTA

Found at i:2565 original size:16 final size:16

Alignment explanation


    Indices: 2544--2575  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       2534 AGCAACAATC

                            
       2544 TTATTGGAGATACACG
          1 TTATTGGAGATACACG

                            
       2560 TTATTGGAGATACACG
          1 TTATTGGAGATACACG

       2576 AAGATACAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31


Consensus pattern (16 bp):   
TTATTGGAGATACACG
Done.