Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000771.1 Kokia drynarioides strain JFW-HI SEQ_111825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 761

Length: 1269
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32


Found at i:1107 original size:100 final size:100

Alignment explanation


    Indices: 927--1126  Score: 287
    Period size: 100  Copynumber: 2.0  Consensus size: 100

        917 TTTGTATTTT

                              *            *                  *              
        927 TACAATTAAGTCCCCTTTTAAACCATAATATCTGAAATGCTCGTATATCTTAATTTTCCAGATCG
          1 TACAATTAAGTCCCCTTTCAAACCATAATATATGAAATGCTCGTATATCTCAATTTTCCAGATCG

                                               
        992 AATCAAAACCCGACTTCACATTCATTCACTAAGGA
         66 AATCAAAACCCGACTTCACATTCATTCACTAAGGA

                                         *                             *   * 
       1027 TACAATTAAGTCCCCTTTCAAACCATAATGTATGAAATGCTCGTA-ACTCTCAATTTTTTC-GGT
          1 TACAATTAAGTCCCCTTTCAAACCATAATATATGAAATGCTCGTATA-TCTCAA-TTTTCCAGAT

                      ***                        
       1090 CGAATCAAAATTTGACTTCACATTCATTCACTAAGGA
         64 CGAATCAAAACCCGACTTCACATTCATTCACTAAGGA

       1127 CCTCGTACTT


Statistics
Matches: 89,  Mismatches: 9, Indels: 4
        0.87            0.09        0.04

Matches are distributed among these distances:
  99    1  0.01
 100   83  0.93
 101    5  0.06

ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33


Consensus pattern (100 bp):   
TACAATTAAGTCCCCTTTCAAACCATAATATATGAAATGCTCGTATATCTCAATTTTCCAGATCG
AATCAAAACCCGACTTCACATTCATTCACTAAGGA
Done.