Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007713.1 Kokia drynarioides strain JFW-HI SEQ_122346, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1702
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:34 original size:16 final size:16

Alignment explanation


    Indices: 13--43  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

          3 ATAATGTGAA

                            
         13 AATAAAGATAAAATGT
          1 AATAAAGATAAAATGT

                   *       
         29 AATAAAGGTAAAATG
          1 AATAAAGATAAAATG

         44 GGATCCATAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23


Consensus pattern (16 bp):   
AATAAAGATAAAATGT
Done.