Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007717.1 Kokia drynarioides strain JFW-HI SEQ_122350, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2189
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38


Found at i:1667 original size:31 final size:32

Alignment explanation


    Indices: 1600--1672  Score: 98
    Period size: 31  Copynumber: 2.3  Consensus size: 32

       1590 TTAATTTGAT

                    *                       
       1600 CAATTTTAAT-TCTTATATTTTTTGAATTGGA
          1 CAATTTTAGTCTCTTATATTTTTTGAATTGGA

                                          *  
       1631 CAATTTTAGTCTCTT-TATTTTTTGAATTTTGA
          1 CAATTTTAGTCTCTTATATTTTTTGAA-TTGGA

                       
       1663 -AATTTTAGTC
          1 CAATTTTAGTC

       1673 CTAACCCAAA


Statistics
Matches: 38,  Mismatches: 2, Indels: 4
        0.86            0.05        0.09

Matches are distributed among these distances:
  31   30  0.79
  32    8  0.21

ACGTcount: A:0.26, C:0.08, G:0.10, T:0.56


Consensus pattern (32 bp):   
CAATTTTAGTCTCTTATATTTTTTGAATTGGA
Done.