Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007719.1 Kokia drynarioides strain JFW-HI SEQ_122352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4050
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35


Found at i:1310 original size:16 final size:17

Alignment explanation


    Indices: 1291--1325  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1281 TTAAAAATGT

                       *     
       1291 AAAATAT-TAATAAATA
          1 AAAATATATAAAAAATA

                             
       1307 AAAATATATAAAAAATA
          1 AAAATATATAAAAAATA

              
       1324 AA
          1 AA

       1326 TTAATTTGTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    7  0.41
  17   10  0.59

ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26


Consensus pattern (17 bp):   
AAAATATATAAAAAATA

Done.