Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000772.1 Kokia drynarioides strain JFW-HI SEQ_111827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1988
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31


Found at i:143 original size:57 final size:57

Alignment explanation


    Indices: 82--198  Score: 225
    Period size: 57  Copynumber: 2.1  Consensus size: 57

         72 TCAGGGCCTA

                        *                                            
         82 TAATAATATAAATATGATTCATAAATAATCAAGCAATCAACACAATCAACTCAGCAC
          1 TAATAATATAAACATGATTCATAAATAATCAAGCAATCAACACAATCAACTCAGCAC

                                                                     
        139 TAATAATATAAACATGATTCATAAATAATCAAGCAATCAACACAATCAACTCAGCAC
          1 TAATAATATAAACATGATTCATAAATAATCAAGCAATCAACACAATCAACTCAGCAC

               
        196 TAA
          1 TAA

        199 AAGAAAATTA


Statistics
Matches: 59,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  57   59  1.00

ACGTcount: A:0.51, C:0.20, G:0.05, T:0.24


Consensus pattern (57 bp):   
TAATAATATAAACATGATTCATAAATAATCAAGCAATCAACACAATCAACTCAGCAC

Done.