Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007722.1 Kokia drynarioides strain JFW-HI SEQ_122355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5839
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34


Found at i:2293 original size:24 final size:25

Alignment explanation


    Indices: 2243--2296  Score: 65
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       2233 AATAATCTTT

                              *      
       2243 AAAATGTCATAAAATAGATAAAAAA
          1 AAAATGTCATAAAATAGACAAAAAA

                 *      *             
       2268 AAAATTTCATAAGA-AGACAAAGAAA
          1 AAAATGTCATAAAATAGACAAA-AAA

                
       2293 AAAA
          1 AAAA

       2297 ATTTAATACA


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  24    6  0.24
  25   19  0.76

ACGTcount: A:0.69, C:0.06, G:0.09, T:0.17


Consensus pattern (25 bp):   
AAAATGTCATAAAATAGACAAAAAA
Done.