Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007728.1 Kokia drynarioides strain JFW-HI SEQ_122361, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9714
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36


Found at i:1155 original size:24 final size:24

Alignment explanation


    Indices: 1102--1148  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1092 TTCTAATCTA

                                    
       1102 TTTATTTGTTTCAATTAAATTTTG
          1 TTTATTTGTTTCAATTAAATTTTG

                          *         
       1126 TTTATTTG-TTCGAGTTAAATTTT
          1 TTTATTTGTTTC-AATTAAATTTT

       1149 TATTATTCTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23    3  0.14
  24   18  0.86

ACGTcount: A:0.23, C:0.04, G:0.11, T:0.62


Consensus pattern (24 bp):   
TTTATTTGTTTCAATTAAATTTTG
Done.