Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007731.1 Kokia drynarioides strain JFW-HI SEQ_122364, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6945
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:3758 original size:20 final size:20

Alignment explanation


    Indices: 3735--3775  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       3725 AGAAGGTCCA

                             *   
       3735 AAAATAAATAA-ATAAATTAT
          1 AAAAT-AATAACATAAAATAT

                                
       3755 AAAATAATAACATAAAATAT
          1 AAAATAATAACATAAAATAT

             
       3775 A
          1 A

       3776 TAGTATTATA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  19    5  0.26
  20   14  0.74

ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27


Consensus pattern (20 bp):   
AAAATAATAACATAAAATAT

Found at i:4193 original size:25 final size:25

Alignment explanation


    Indices: 4141--4191  Score: 77
    Period size: 24  Copynumber: 2.1  Consensus size: 25

       4131 AATTATTTAA

                      *              
       4141 TTAAATAATATTACTTTATTAATAT
          1 TTAAATAATACTACTTTATTAATAT

                         *           
       4166 TTAAATAA-ACTATTTTATTAATAT
          1 TTAAATAATACTACTTTATTAATAT

              
       4190 TT
          1 TT

       4192 TATTATAAAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  24   16  0.67
  25    8  0.33

ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53


Consensus pattern (25 bp):   
TTAAATAATACTACTTTATTAATAT
Done.