Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007732.1 Kokia drynarioides strain JFW-HI SEQ_122365, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7068
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36


Found at i:1751 original size:24 final size:25

Alignment explanation


    Indices: 1723--1773  Score: 77
    Period size: 24  Copynumber: 2.1  Consensus size: 25

       1713 TTTTATAATA

                            *        
       1723 AAATATTAATAAAATAGT-TTATTT
          1 AAATATTAATAAAATAATATTATTT

                         *           
       1747 AAATATTAATAAAGTAATATTATTT
          1 AAATATTAATAAAATAATATTATTT

              
       1772 AA
          1 AA

       1774 TTAAATAATT


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  24   16  0.67
  25    8  0.33

ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43


Consensus pattern (25 bp):   
AAATATTAATAAAATAATATTATTT

Found at i:2155 original size:20 final size:20

Alignment explanation


    Indices: 2127--2167  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       2117 TATAATACTA

                *                
       2127 TATATTTTATGTTA-TTATTT
          1 TATAATTTAT-TTATTTATTT

                                
       2147 TATAATTTATTTATTTATTT
          1 TATAATTTATTTATTTATTT

             
       2167 T
          1 T

       2168 TGGACCTTCT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  19    3  0.16
  20   16  0.84

ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71


Consensus pattern (20 bp):   
TATAATTTATTTATTTATTT
Done.