Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007747.1 Kokia drynarioides strain JFW-HI SEQ_122380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2217
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39


Found at i:414 original size:15 final size:15

Alignment explanation


    Indices: 394--422  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        384 AAGAGAATAG

                           
        394 GAGAGCAAGAGACAC
          1 GAGAGCAAGAGACAC

                          
        409 GAGAGCAAGAGACA
          1 GAGAGCAAGAGACA

        423 GCATAAGTAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.48, C:0.17, G:0.34, T:0.00


Consensus pattern (15 bp):   
GAGAGCAAGAGACAC

Found at i:1597 original size:32 final size:30

Alignment explanation


    Indices: 1525--1602  Score: 95
    Period size: 32  Copynumber: 2.5  Consensus size: 30

       1515 TTGATCCAAT

                  *                       *
       1525 TTGGTATTTAAACTTGACACTTTTTCCTAAT
          1 TTGGTACTTAAACTTGACACTTTTT-CTAAG

                                             
       1556 TTGGTACTTAAACTTGACACACATTTTT-TAAG
          1 TTGGTACTTAAACTTG--ACAC-TTTTTCTAAG

                           
       1588 TTGGTACTTAAACTT
          1 TTGGTACTTAAACTT

       1603 TTTGTGGTCT


Statistics
Matches: 42,  Mismatches: 2, Indels: 5
        0.86            0.04        0.10

Matches are distributed among these distances:
  31   15  0.36
  32   18  0.43
  33    4  0.10
  34    5  0.12

ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45


Consensus pattern (30 bp):   
TTGGTACTTAAACTTGACACTTTTTCTAAG
Done.