Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007751.1 Kokia drynarioides strain JFW-HI SEQ_122384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4103
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32


Found at i:1155 original size:24 final size:23

Alignment explanation


    Indices: 1121--1166  Score: 65
    Period size: 24  Copynumber: 2.0  Consensus size: 23

       1111 TTTCATCTTT

                       *           
       1121 TATTAATTTGCTCTGACATTTTA
          1 TATTAATTTGCACTGACATTTTA

                             *     
       1144 TATTATATTTGCACTGATATTTT
          1 TATTA-ATTTGCACTGACATTTT

       1167 TGACTCTTAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  23    5  0.25
  24   15  0.75

ACGTcount: A:0.26, C:0.11, G:0.09, T:0.54


Consensus pattern (23 bp):   
TATTAATTTGCACTGACATTTTA
Done.