Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007753.1 Kokia drynarioides strain JFW-HI SEQ_122386, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17261
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32

Warning! 70 characters in sequence are not A, C, G, or T


Found at i:1149 original size:4 final size:4

Alignment explanation


    Indices: 1142--1169  Score: 56
    Period size: 4  Copynumber: 7.0  Consensus size: 4

       1132 AATAGCATTT

                                              
       1142 AATA AATA AATA AATA AATA AATA AATA
          1 AATA AATA AATA AATA AATA AATA AATA

       1170 TATATAAACG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   24  1.00

ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25


Consensus pattern (4 bp):   
AATA

Found at i:1361 original size:6 final size:6

Alignment explanation


    Indices: 1350--1375  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       1340 GCCGTGATAA

                                          
       1350 CATGGG CATGGG CATGGG CATGGG CA
          1 CATGGG CATGGG CATGGG CATGGG CA

       1376 GAAACAGGTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.19, C:0.19, G:0.46, T:0.15


Consensus pattern (6 bp):   
CATGGG

Found at i:4023 original size:2 final size:2

Alignment explanation


    Indices: 4016--4041  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       4006 GGCGTTGATC

                                                  
       4016 AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG

       4042 CTCTGAAGAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:13800 original size:14 final size:14

Alignment explanation


    Indices: 13770--13810  Score: 55
    Period size: 14  Copynumber: 2.9  Consensus size: 14

      13760 CTAAAAATGA

                *       * 
      13770 ATATATATATATAT
          1 ATATGTATATATGT

                    *     
      13784 ATATGTATGTATGT
          1 ATATGTATATATGT

                         
      13798 ATATGTATATATG
          1 ATATGTATATATG

      13811 GCTGGAATCT


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  14   23  1.00

ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49


Consensus pattern (14 bp):   
ATATGTATATATGT
Done.