Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007758.1 Kokia drynarioides strain JFW-HI SEQ_122391, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2502
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.40


Found at i:1715 original size:20 final size:19

Alignment explanation


    Indices: 1669--1711  Score: 61
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       1659 ATTTTTAAGC

                 *   *         
       1669 ATTTTAAAAAAAAGTTTAA
          1 ATTTTTAAATAAAGTTTAA

                               
       1688 ATTTTTAAATAAAGTTT-A
          1 ATTTTTAAATAAAGTTTAA

                  
       1706 ATTTTT
          1 ATTTTT

       1712 TTAACTATTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  18    7  0.32
  19   15  0.68

ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49


Consensus pattern (19 bp):   
ATTTTTAAATAAAGTTTAA
Done.