Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000776.1 Kokia drynarioides strain JFW-HI SEQ_111833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139163

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1192--1227
15
2.5
14
86
8
54
52
2
2
41
1.30
3326--3376
6
8.3
6
91
4
84
17
60
1
19
1.45
3630--3661
6
5.3
6
96
0
55
18
68
0
12
1.20
7196--7257
21
2.8
21
75
22
56
58
27
1
12
1.44
9330--9404
24
3.1
23
88
3
105
58
6
10
24
1.55
10969--11038
29
2.4
28
79
9
68
61
4
2
31
1.30
10987--11048
20
3.2
20
76
2
72
59
4
3
32
1.34
11022--11064
17
2.5
16
82
14
50
53
2
4
39
1.34
10969--11099
10
13.8
9
67
15
52
58
2
3
36
1.26
11412--11486
21
3.8
20
75
7
73
33
0
0
66
0.92
11414--11486
29
2.5
29
85
12
96
34
0
0
65
0.93
11414--11474
8
6.6
9
77
18
63
34
0
0
65
0.93
11750--11921
81
2.1
80
86
5
247
40
16
4
38
1.70
12186--12264
30
2.7
30
79
13
83
24
25
22
27
2.00
12208--12302
45
2.1
45
82
0
109
25
25
22
27
2.00
12593--12764
79
2.2
79
90
3
274
38
4
17
39
1.70
12943--12988
22
2.1
22
95
0
83
45
2
4
47
1.34
38220--38251
16
2.0
16
100
0
64
37
18
6
37
1.76
41474--41850
195
1.9
197
82
3
465
20
24
16
38
1.92
44232--44262
15
2.1
15
93
0
53
6
3
45
45
1.45
47410--47498
30
3.0
30
89
0
124
19
32
12
35
1.89
48343--48396
28
1.9
28
82
14
67
31
3
0
64
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58065--58181
30
3.9
30
86
1
128
20
38
12
28
1.89
60334--60445
30
3.7
30
85
0
143
16
41
10
31
1.83
68296--68367
30
2.4
29
86
2
90
22
40
9
27
1.85
70826--70913
30
2.9
30
89
0
131
21
39
10
28
1.86
72129--72170
22
2.0
22
85
4
59
14
11
4
69
1.34
73398--73485
30
2.9
30
86
0
122
26
37
9
27
1.86
74709--74753
22
2.0
22
82
4
54
15
20
6
57
1.60
75952--76025
30
2.5
30
90
0
112
17
39
14
28
1.89
75952--76037
30
2.9
30
85
0
100
16
38
13
31
1.88
80944--81031
30
2.9
30
84
0
104
23
35
11
29
1.90
80927--81352
218
1.9
221
83
3
547
23
28
15
33
1.95
83733--83820
30
2.9
30
84
0
113
22
37
11
28
1.89
85129--86795
835
2.0
832
85
2
2250
26
19
21
32
1.97
87744--87782
20
2.0
20
85
10
53
74
5
10
10
1.21
88816--88986
80
2.2
80
87
8
267
39
16
4
39
1.69
96302--96344
20
2.2
20
88
12
63
46
4
0
48
1.22
98932--98988
10
5.6
10
78
12
53
70
1
0
28
0.98
99075--99142
25
2.8
24
81
4
73
63
0
5
30
1.18
100028--100077
26
1.9
26
87
0
73
42
2
2
54
1.23
102469--102505
18
2.1
18
100
0
74
45
10
21
21
1.82
104585--104643
30
2.0
30
90
6
93
47
8
0
44
1.33
104713--104745
3
11.0
3
100
0
66
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113531--113593
24
2.6
24
87
0
90
25
14
9
50
1.72
113920--113964
23
2.0
23
95
0
81
26
11
13
48
1.75
115474--115544
24
3.0
25
76
14
78
28
12
7
52
1.65
119876--119947
30
2.4
31
81
11
103
51
2
4
41
1.35
126185--126249
29
2.2
31
84
13
84
47
7
10
33
1.67
126271--126400
66
2.0
66
92
0
215
44
12
5
37
1.65
127712--127746
2
17.5
2
100
0
70
51
0
48
0
1.00
128032--128076
20
2.2
20
88
7
65
42
20
6
31
1.77
128085--128163
40
2.0
38
80
4
86
43
8
8
39
1.67
129336--129468
59
2.2
60
74
1
142
39
16
7
36
1.77
129561--129675
58
2.0
58
86
3
160
46
12
11
29
1.76
129900--129984
40
2.2
38
85
4
107
44
5
9
40
1.61
129922--129985
19
3.3
19
74
8
65
45
7
6
40
1.58
131308--131426
58
2.1
58
93
0
202
40
24
10
24
1.87
138479--138542
31
2.0
31
84
3
83
40
3
9
46
1.52
138488--138549
31
2.1
29
87
6
88
40
3
8
48
1.49

Tables:   1

The End!