Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007760.1 Kokia drynarioides strain JFW-HI SEQ_122393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5892
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34


Found at i:4145 original size:17 final size:18

Alignment explanation


    Indices: 4113--4151  Score: 53
    Period size: 17  Copynumber: 2.2  Consensus size: 18

       4103 TTGAAAAAAT

                              
       4113 TATAAACAATAAATTAAA
          1 TATAAACAATAAATTAAA

                       *     *
       4131 TATAAA-AATATATTAAT
          1 TATAAACAATAAATTAAA

                
       4148 TATA
          1 TATA

       4152 TGGAAAAAAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  17   13  0.68
  18    6  0.32

ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36


Consensus pattern (18 bp):   
TATAAACAATAAATTAAA
Done.