Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007762.1 Kokia drynarioides strain JFW-HI SEQ_122395, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3639
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38


Found at i:240 original size:13 final size:13

Alignment explanation


    Indices: 219--249  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

        209 AATATTCTAC

                *        
        219 TTTTCCTTTACTT
          1 TTTTACTTTACTT

                         
        232 TTTTACTTTACTT
          1 TTTTACTTTACTT

                 
        245 TTTTA
          1 TTTTA

        250 AACTTTTTAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71


Consensus pattern (13 bp):   
TTTTACTTTACTT
Done.