Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007764.1 Kokia drynarioides strain JFW-HI SEQ_122397, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19821
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:6456 original size:7 final size:7

Alignment explanation


    Indices: 6437--6466  Score: 51
    Period size: 7  Copynumber: 4.1  Consensus size: 7

       6427 TTTACCAACT

                    
       6437 ACTCACGA
          1 ACTCAC-A

                   
       6445 ACTCACA
          1 ACTCACA

                   
       6452 ACTCACA
          1 ACTCACA

                   
       6459 ACTCACA
          1 ACTCACA

             
       6466 A
          1 A

       6467 GCTGTTTATA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   7   16  0.73
   8    6  0.27

ACGTcount: A:0.43, C:0.40, G:0.03, T:0.13


Consensus pattern (7 bp):   
ACTCACA

Found at i:12879 original size:31 final size:29

Alignment explanation


    Indices: 12841--12913  Score: 92
    Period size: 29  Copynumber: 2.4  Consensus size: 29

      12831 CTACAAAAAC

                    *         *          * 
      12841 AGTCACTTTTGTTTGATTCAGATTACATTTT
          1 AGTCACTTATGTTTGA--AAGATTACATTGT

                              *          
      12872 AGTCACTTATGTTTGAAATATTACATTGT
          1 AGTCACTTATGTTTGAAAGATTACATTGT

                         
      12901 AGTCACTTATGTT
          1 AGTCACTTATGTT

      12914 AGTATTTTGT


Statistics
Matches: 38,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
  29   23  0.61
  31   15  0.39

ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48


Consensus pattern (29 bp):   
AGTCACTTATGTTTGAAAGATTACATTGT
Done.