Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007766.1 Kokia drynarioides strain JFW-HI SEQ_122399, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4522
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32


Found at i:3171 original size:24 final size:24

Alignment explanation


    Indices: 3144--3189  Score: 58
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       3134 ATACAAGTTA

                              *      
       3144 AGAA-GTAAATCTGTCAGCGCAATC
          1 AGAATGTAAAT-TGTCAGAGCAATC

                   *              
       3168 AGAATGTTAATTGTCAGAGCAA
          1 AGAATGTAAATTGTCAGAGCAA

       3190 ATTTATAGAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  24   14  0.74
  25    5  0.26

ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24


Consensus pattern (24 bp):   
AGAATGTAAATTGTCAGAGCAATC
Done.