Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007777.1 Kokia drynarioides strain JFW-HI SEQ_122411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7941
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33


Found at i:7739 original size:67 final size:67

Alignment explanation


    Indices: 7601--7755  Score: 168
    Period size: 67  Copynumber: 2.3  Consensus size: 67

       7591 GGGAAGACCT

                  *                *       *                  *    **   *    
       7601 AACTTTCCAACATCAACATGATGTGAAAAACTTTTGCAACTTCAACATGGTGAGAGGACCCATTT
          1 AACTTTACAACATCAACATGATGGGAAAAACCTTTGCAACTTCAACATGGAGAGAAAACCAATTT

             *
       7666 CG
         66 CA

                  *     *              *        *                      *     
       7668 AACTTTGCAACACCAACATGATGGGAAGAACCTTTGTAACTTCAACATGGAGAGAAAACTAA-TT
          1 AACTTTACAACATCAACATGATGGGAAAAACCTTTGCAACTTCAACATGGAGAGAAAACCAATTT

               
       7732 CTA
         66 C-A

                       *         
       7735 AACTTTACAACTTCAACATGA
          1 AACTTTACAACATCAACATGA

       7756 CGAGAGGAGG


Statistics
Matches: 72,  Mismatches: 15, Indels: 2
        0.81            0.17        0.02

Matches are distributed among these distances:
  66    3  0.04
  67   69  0.96

ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26


Consensus pattern (67 bp):   
AACTTTACAACATCAACATGATGGGAAAAACCTTTGCAACTTCAACATGGAGAGAAAACCAATTT
CA
Done.