Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007779.1 Kokia drynarioides strain JFW-HI SEQ_122413, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5912
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:949 original size:28 final size:28

Alignment explanation


    Indices: 918--981  Score: 83
    Period size: 28  Copynumber: 2.3  Consensus size: 28

        908 TTACTTTCAC

                   *       *            
        918 AGAGATAGTCACACAGGCTTCCTTTAAG
          1 AGAGATAATCACACAAGCTTCCTTTAAG

                     *   *             *
        946 AGAGATAATTACATAAGCTTCCTTTAAT
          1 AGAGATAATCACACAAGCTTCCTTTAAG

                    
        974 AGAGATAA
          1 AGAGATAA

        982 CCATAAAGGC


Statistics
Matches: 31,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  28   31  1.00

ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28


Consensus pattern (28 bp):   
AGAGATAATCACACAAGCTTCCTTTAAG

Found at i:4646 original size:24 final size:24

Alignment explanation


    Indices: 4595--4649  Score: 74
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       4585 TCTTTTAGTT

                           *       *
       4595 AAACTCTGTTTATTTGTTTCAATT
          1 AAACTCTGTTTATTTATTTCAATC

                               * *  
       4619 AAACTCTGTTTATTTATTTGAGTC
          1 AAACTCTGTTTATTTATTTCAATC

                   
       4643 AAACTCT
          1 AAACTCT

       4650 TGTTAATTAG


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49


Consensus pattern (24 bp):   
AAACTCTGTTTATTTATTTCAATC
Done.