Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000778.1 Kokia drynarioides strain JFW-HI SEQ_111838, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1456
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41


Found at i:284 original size:109 final size:109

Alignment explanation


    Indices: 93--308  Score: 290
    Period size: 109  Copynumber: 2.0  Consensus size: 109

         83 TTTTCTTTAG

                  *        *       *               *                *    **  
         93 GTACATGGATGACCCGAATTTAAGTTATTTTTATAGAAAGTAAACACTCCATCAATGGATCGTAA
          1 GTACATCGATGACCCAAATTTAAATTATTTTTATAGAAAATAAACACTCCATCAATAGATCCCAA

                                                         
        158 CTTGAAATTTGATTCATTATTTA-ATTTTTAACCATTTGTTATAA
         66 CTTGAAATTTGATTCATTATTTAGA-TTTTAACCATTTGTTATAA

                         *                              *    *               
        202 GTACATCGATGACTCAAATTTAAATTATTTTTATAGAAAATAAATACTCGATCAATAGATCCCAA
          1 GTACATCGATGACCCAAATTTAAATTATTTTTATAGAAAATAAACACTCCATCAATAGATCCCAA

                  *    *      *              *        
        267 CTTGAAGTTTGGTTCATTGTTTAGATTTTAACCTTTTGTTAT
         66 CTTGAAATTTGATTCATTATTTAGATTTTAACCATTTGTTAT

        309 GCAACTCAAA


Statistics
Matches: 92,  Mismatches: 14, Indels: 2
        0.85            0.13        0.02

Matches are distributed among these distances:
 109   91  0.99
 110    1  0.01

ACGTcount: A:0.34, C:0.13, G:0.12, T:0.40


Consensus pattern (109 bp):   
GTACATCGATGACCCAAATTTAAATTATTTTTATAGAAAATAAACACTCCATCAATAGATCCCAA
CTTGAAATTTGATTCATTATTTAGATTTTAACCATTTGTTATAA
Done.