Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007785.1 Kokia drynarioides strain JFW-HI SEQ_122419, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4258
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37


Found at i:1443 original size:28 final size:28

Alignment explanation


    Indices: 1411--1468  Score: 89
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       1401 AAGATTATAA

                              *         
       1411 TTGTAATTAATTTAAATATTAACAAGTT
          1 TTGTAATTAATTTAAATAGTAACAAGTT

                    *    *              
       1439 TTGTAATTTATTTGAATAGTAACAAGTT
          1 TTGTAATTAATTTAAATAGTAACAAGTT

              
       1467 TT
          1 TT

       1469 TTTCAATTGT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.38, C:0.03, G:0.10, T:0.48


Consensus pattern (28 bp):   
TTGTAATTAATTTAAATAGTAACAAGTT
Done.