Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007788.1 Kokia drynarioides strain JFW-HI SEQ_122422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8141
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36


Found at i:859 original size:17 final size:18

Alignment explanation


    Indices: 834--867  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        824 TAAAAAGAAT

                *             
        834 TAAATAAAA-TAAAATTA
          1 TAAAAAAAATTAAAATTA

                             
        851 TAAAAAAAATTAAAATT
          1 TAAAAAAAATTAAAATT

        868 TACATTTAAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.53
  18    7  0.47

ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29


Consensus pattern (18 bp):   
TAAAAAAAATTAAAATTA

Found at i:977 original size:97 final size:97

Alignment explanation


    Indices: 791--984  Score: 361
    Period size: 97  Copynumber: 2.0  Consensus size: 97

        781 AGTCCGTTTA

                                                   *   *                     
        791 CTATTAAATGCATCGATTTTATTTTTGTATTATTAAAAAGAATTAAATAAAATAAAATTATAAAA
          1 CTATTAAATGCATCGATTTTATTTTTGTATTATTAAAAAAAATCAAATAAAATAAAATTATAAAA

                                            
        856 AAAATTAAAATTTACATTTAAAAAATAATATT
         66 AAAATTAAAATTTACATTTAAAAAATAATATT

                                                                             
        888 CTATTAAATGCATCGATTTTATTTTTGTATTATTAAAAAAAATCAAATAAAATAAAATTATAAAA
          1 CTATTAAATGCATCGATTTTATTTTTGTATTATTAAAAAAAATCAAATAAAATAAAATTAT-AAA

                                            
        953 AAAAATTAAAATTTACATTTAAAAAATAATAT
         65 AAAAATTAAAATTTACATTTAAAAAATAATAT

        985 GTAATTTTTT


Statistics
Matches: 94,  Mismatches: 2, Indels: 1
        0.97            0.02        0.01

Matches are distributed among these distances:
  97   59  0.63
  98   35  0.37

ACGTcount: A:0.54, C:0.05, G:0.04, T:0.38


Consensus pattern (97 bp):   
CTATTAAATGCATCGATTTTATTTTTGTATTATTAAAAAAAATCAAATAAAATAAAATTATAAAA
AAAATTAAAATTTACATTTAAAAAATAATATT
Done.