Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007791.1 Kokia drynarioides strain JFW-HI SEQ_122425, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7591
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34


Found at i:1839 original size:21 final size:20

Alignment explanation


    Indices: 1815--1859  Score: 72
    Period size: 21  Copynumber: 2.2  Consensus size: 20

       1805 ACTTAACATA

                                 
       1815 ATAATATTTTATAAGTAATAT
          1 ATAATATTTTATAAGT-ATAT

                         *      
       1836 ATAATATTTTATATGTATAT
          1 ATAATATTTTATAAGTATAT

                
       1856 ATAA
          1 ATAA

       1860 AGAAAAGATG


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  20    8  0.35
  21   15  0.65

ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49


Consensus pattern (20 bp):   
ATAATATTTTATAAGTATAT
Done.