Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007793.1 Kokia drynarioides strain JFW-HI SEQ_122427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4607
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37


Found at i:3687 original size:21 final size:21

Alignment explanation


    Indices: 3661--3729  Score: 86
    Period size: 21  Copynumber: 3.3  Consensus size: 21

       3651 TTTAGTATCG

                                 
       3661 GTAGAAGCATGCATTGTTTCA
          1 GTAGAAGCATGCATTGTTTCA

                           *    *
       3682 GTAGAAGCATGCATTATTTCG
          1 GTAGAAGCATGCATTGTTTCA

                              *   
       3703 GTAGAAGTCAT-CATTGTATCA
          1 GTAGAAG-CATGCATTGTTTCA

            *     
       3724 ATAGAA
          1 GTAGAA

       3730 CCATTACCAC


Statistics
Matches: 41,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  21   38  0.93
  22    3  0.07

ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32


Consensus pattern (21 bp):   
GTAGAAGCATGCATTGTTTCA
Done.