Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007799.1 Kokia drynarioides strain JFW-HI SEQ_122434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1142
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31


Found at i:887 original size:30 final size:29

Alignment explanation


    Indices: 852--1142  Score: 264
    Period size: 30  Copynumber: 9.9  Consensus size: 29

        842 CTAAACTTTA

                                          
        852 CAAAAATTCTATTTTTACCCCCGAAACTTC
          1 CAAAAATTCTATTTTTACCCCC-AAACTTC

                    *             *     *
        882 CAAAAATTTTATTTTTACCCCCGAACTTT
          1 CAAAAATTCTATTTTTACCCCCAAACTTC

                    *  *           *      *
        911 CAAAAATCCCTTTTTTTAACCCCAAAACTTA
          1 CAAAAAT-TCTATTTTT-ACCCCCAAACTTC

                                 *        
        942 CAAAAATT-TCATTTTTACCCTCAAACTTC
          1 CAAAAATTCT-ATTTTTACCCCCAAACTTC

                                *        
        971 CAAAAATTCTATTTTTACCCTCAAAC-TC
          1 CAAAAATTCTATTTTTACCCCCAAACTTC

                    *             **       
        999 CAAAAAATCCTATTTTTAACCCTAAAACTTC
          1 C-AAAAATTCTATTTTT-ACCCCCAAACTTC

                      *                  
       1030 CAAAAATTC-CTTTTTACCCCCAAACTTC
          1 CAAAAATTCTATTTTTACCCCCAAACTTC

                   * *           **       
       1058 CAAAAATCCCATTTTTAACCCTTAAACTTC
          1 CAAAAATTCTATTTTT-ACCCCCAAACTTC

            *      * *        * * *       
       1088 AAAAAATCCCATTTTTGAGCTCGAAACTTC
          1 CAAAAATTCTATTTTT-ACCCCCAAACTTC

                     *          *    
       1118 CAAAAATTCCATTTTTACCCTCAAA
          1 CAAAAATTCTATTTTTACCCCCAAA


Statistics
Matches: 216,  Mismatches: 36, Indels: 19
        0.80            0.13        0.07

Matches are distributed among these distances:
  28   22  0.10
  29   76  0.35
  30   98  0.45
  31   20  0.09

ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34


Consensus pattern (29 bp):   
CAAAAATTCTATTTTTACCCCCAAACTTC

Done.