Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007809.1 Kokia drynarioides strain JFW-HI SEQ_122445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6223
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39


Found at i:4515 original size:19 final size:20

Alignment explanation


    Indices: 4493--4530  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       4483 ATAAAAATAT

                                
       4493 TCCAA-CACCATAATTTCAA
          1 TCCAAGCACCATAATTTCAA

                  * *          
       4512 TCCAAGGATCATAATTTCA
          1 TCCAAGCACCATAATTTCA

       4531 TCTCACTTTT


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  19    5  0.31
  20   11  0.69

ACGTcount: A:0.39, C:0.26, G:0.05, T:0.29


Consensus pattern (20 bp):   
TCCAAGCACCATAATTTCAA
Done.