Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01007823.1 Kokia drynarioides strain JFW-HI SEQ_122459, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10802
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36


Found at i:2845 original size:6 final size:6

Alignment explanation


    Indices: 2827--2862  Score: 63
    Period size: 6  Copynumber: 6.0  Consensus size: 6

       2817 GGGTGGGACT

                     *                               
       2827 GAAGGA GATGGA GAAGGA GAAGGA GAAGGA GAAGGA
          1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA

       2863 TGGGAATCGC


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.47, C:0.00, G:0.50, T:0.03


Consensus pattern (6 bp):   
GAAGGA

Done.